Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1207 ATGGACTTGTACGGTCGGGCCCCCGTCAGGAACGGATCCAACCCGGTCAACCAACCCGAATGGCCTTCACCGGGCATCGACACTGCTCTCGAAGAATCCATGTGGCATTTAACCCTCGGTGGCGGCGAATCTTACCCGGAGCGGCCCGGCGTGCCCAATTGTGTTTATTACATGCGAACCGGTGTGTGCGGATACGGTAGCAGGTGTCGTTACAATCACCCTCGTGATCGTGCTGCGTATTATTTAAAGACTGGAACCTGTAAATTTGGAGCATCCTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAAGTCAAGCTCCACTAAATACTTACGGATACCCATTAAGGCCGGGTGAGAAAGAGTGCTCCTATTATTTAAAAACGGGGCAGTGCAAATTTGGTGTTACCTGTAAATTCCATCATCCTCAACCTGCTGGCTCACCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACCGTTCCTGTGCCTGAACAGTATGCAGGAGCTTCGGCAAACTTGAGAGTGGCCAGGCCCCCTGTATTGTCTGGTTCCTATGTACAAGGGGCTTATGGTCCTGTACTTCTTTCTCCTGGGGTTGTCCAATTTCCTGGATGGAGTCCTTACTCGGCACCTGTAAGTCCTGTGCTATCTCCTGGTGCTCAACCTGCTGTTGGGGCCACTTCTTTATACGGAGTGACCCAGTTGTCATCACCAACATCAGCTTTTGCTAGACCATATACTCCGCTGTCCTCTACTACTGGACCTTCAGGAAACATACCTAAGGATCAATTATTTCCTGAAAGACCCGGTGAACCTGAATGCCAATACTTTCTAAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGGGATCATATTGTTGCACGGCCATTTCTTAGCCCAATTGGACTTCCTTTACGACCGGGCGAACAACCTTGCGCTTTTTATTTGCAAAACGGGCATTGCAAGTTTGGCTCCACATGCAAATTTGACCATCCTTTGGGATCTTTGAACTACAGTCCATCGGTATCTTCTTTCATTGATGTGCCAGTTACTCCATACCCGGTGGGGTCTTTGCTGTCTCAGCTGGCTCCTTCTACAACATCTTCAGAGCTTCGACCTGAACTGATATCCGGGTCCAAAAAGGAATCCCTTTCAGCCAGAATACCTTCTTCTGGTACTTCTGTGGGTCTAATTTTCTCACAAGGTGGTTCTATCTCGTTATCTGATGTGCAACTCTCAAGTCAGAGTTCTGCCCCTCTTGGCAGTAGCAGAAGCAACAGACAAAGCGGTGAGATACGTTGA 1341 0.4825 MDLYGRAPVRNGSNPVNQPEWPSPGIDTALEESMWHLTLGGGESYPERPGVPNCVYYMRTGVCGYGSRCRYNHPRDRAAYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNTYGYPLRPGEKECSYYLKTGQCKFGVTCKFHHPQPAGSPLPASAPQFYQQVQSPTVPVPEQYAGASANLRVARPPVLSGSYVQGAYGPVLLSPGVVQFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSPTSAFARPYTPLSSTTGPSGNIPKDQLFPERPGEPECQYFLRTGDCKFGLACRYHHPRDHIVARPFLSPIGLPLRPGEQPCAFYLQNGHCKFGSTCKFDHPLGSLNYSPSVSSFIDVPVTPYPVGSLLSQLAPSTTSSELRPELISGSKKESLSARIPSSGTSVGLIFSQGGSISLSDVQLSSQSSAPLGSSRSNRQSGEIR* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1207 446 ProSiteProfiles Zinc finger C3H1-type profile. 118 146 IPR000571 GO:0046872
Vra8g1207 446 SUPERFAMILY CCCH zinc finger 120 146 IPR036855 GO:0046872
Vra8g1207 446 SMART c3hfinal6 275 302 IPR000571 GO:0046872
Vra8g1207 446 SMART c3hfinal6 118 145 IPR000571 GO:0046872
Vra8g1207 446 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Vra8g1207 446 SMART c3hfinal6 319 346 IPR000571 GO:0046872
Vra8g1207 446 SMART c3hfinal6 76 99 IPR000571 GO:0046872
Vra8g1207 446 ProSiteProfiles Zinc finger C3H1-type profile. 275 303 IPR000571 GO:0046872
Vra8g1207 446 SUPERFAMILY CCCH zinc finger 280 303 IPR036855 GO:0046872
Vra8g1207 446 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 120 145 IPR000571 GO:0046872
Vra8g1207 446 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 80 99 IPR000571 GO:0046872
Vra8g1207 446 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 277 302 IPR000571 GO:0046872
Vra8g1207 446 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Vra8g1207 446 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 321 345 IPR000571 GO:0046872
Vra8g1207 446 SUPERFAMILY CCCH zinc finger 322 350 IPR036855 GO:0046872
Vra8g1207 446 MobiDBLite consensus disorder prediction 423 446 - -
Vra8g1207 446 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Vra8g1207 446 ProSiteProfiles Zinc finger C3H1-type profile. 80 100 IPR000571 GO:0046872
Vra8g1207 446 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Vra8g1207 446 MobiDBLite consensus disorder prediction 1 22 - -
Vra8g1207 446 PANTHER PROTEIN PHOSPHATASE RELATED 18 429 - -
Vra8g1207 446 Gene3D - 78 152 - -
Vra8g1207 446 Gene3D - 273 356 - -
Vra8g1207 446 Gene3D - 42 77 - -
Vra8g1207 446 ProSiteProfiles Zinc finger C3H1-type profile. 319 347 IPR000571 GO:0046872
Vra8g1207 446 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 18 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1207 Vra-Chr8 27428102 27432459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1207 1 419 C2H2 Transcription Factor Family AT5G18550 47.742 3.69e-118 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra8g1207 zf-CCCH 1.5e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1207 - - vun:114192085 887.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1207 8 27428102 27432459 Vra8g1207 8 27428102 27432459 ECH