Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1201 ATGAATGCTTCTCCCAATCAAAAACAGAGGACATGCGACTATTGTGGGGACTTCACCGCTCTTCTATATTGCAGAGCAGATTCTGCAAAGTTATGTTTCTTCTGTGACCGCAAACTCCACTTCCCCAACCAGCTTTTCTCCAAGCACTCCCGCACACAGCTCTGTGATGAGTGTGGCGATTCCCCTGCATCGGTGCTCTGTTATGCAGAGAACTCTGTTTTCTGCCACCACTGTGACTGCGAAAACCATAACAACCACTTGTTGTCTCAGCAACACCAACGGAGACCCCTTCAGGGGTTCTCTGGCTGCCCTTCTGTCATTCATATGTTAATGATTTTTGGTCTTACCGAAAAATCTCTGCTTTCAACTGAGGTAGGAAGTTCCCATCACCATGGTCTTTCCAATTTGCACGTGTGGAATGCTCCTTCTGTTTTTGGTCTTGAAGATTTCATTGCTTCCTCTTCTTCTTATAAGAATCGTAAGGGTGCGTGCGGGAGACAGAAAGAAGAAATTCTGAGTCAGCTTGGTGAACTAATAAAGTTGGAGCCTGACTTGATTCATGGAGAAGTAGATGCTGCTGAACCACAAAAGCAATTTGGAAATTTGTCTACTGGTTTTGAACGTGACATAGAGACTAATATGTTTCCTTCATATGAGGCAGGTGTGTTTCGTTGGCATGGAGAAAGCAGTGATCGTGCAAATCAAATTGTTCCTTCTGATAATTCGGTGAGTGATTATAGCGAGCTAGTTTCGGCTAAAGATCCAAGCTTTACCATCCCTGTTGCAACGACTCATGAAAGAGATTCTGCATTATTGCGTTACAGAGAGAAGAAGAAAACAAGAAGCCATGAGCATACACCACCAAGACCTTGGTGTTCTTTCTCTCTAGCTTCTAGAAGTCTCGTGCTCTCTCCTTTTCTTGGCTGA 927 0.4423 MNASPNQKQRTCDYCGDFTALLYCRADSAKLCFFCDRKLHFPNQLFSKHSRTQLCDECGDSPASVLCYAENSVFCHHCDCENHNNHLLSQQHQRRPLQGFSGCPSVIHMLMIFGLTEKSLLSTEVGSSHHHGLSNLHVWNAPSVFGLEDFIASSSSYKNRKGACGRQKEEILSQLGELIKLEPDLIHGEVDAAEPQKQFGNLSTGFERDIETNMFPSYEAGVFRWHGESSDRANQIVPSDNSVSDYSELVSAKDPSFTIPVATTHERDSALLRYREKKKTRSHEHTPPRPWCSFSLASRSLVLSPFLG* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1201 308 ProSiteProfiles Zinc finger B-box type profile. 50 97 IPR000315 GO:0008270
Vra8g1201 308 SMART bboxneu5 55 97 IPR000315 GO:0008270
Vra8g1201 308 SMART bboxneu5 7 54 IPR000315 GO:0008270
Vra8g1201 308 ProSiteProfiles Zinc finger B-box type profile. 7 54 IPR000315 GO:0008270
Vra8g1201 308 CDD Bbox1_BBX-like 12 54 - -
Vra8g1201 308 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 7 247 - -
Vra8g1201 308 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 7 247 - -
Vra8g1201 308 CDD Bbox1_BBX-like 54 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1201 Vra-Chr8 27296370 27300189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1201 7 281 C2C2-CO-like Transcription Factor Family AT2G47890 35.275 4.46e-50 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1201 - - var:108325426 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1201 8 27296370 27300189 Vra8g1201 8 27296370 27300189 ECH
Vra3g0670 3 7206367 7210902 Vra8g1201 8 27296370 27300189 PCT