Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1198 ATGTCGTTTAGGAGTATCATCGCGGAGAGGAAGGGATTTGAGTTTAAGTTTGGGTATAGTATGAGATCCAGGTCACAGTCACACAGTGATGCCATTGTCCAGGATCGTTTGGTGGTACTTGATGGGTTGAAGCAGAGTTGTTGGGCTAACATGCCCCCTGAGCTTTTGAGGGATGTGCTCATGAGGATTGAGGCTTCTGAGGATTCCTGGCCTGCCCGAAAACACGTCGTCGCCTGTGCCGGAGTGTGCCGCAGTTGGAGAGAAATCATGAAGGAAATTGTCAAATCCCCTCAAATATCTGGCAACTTGACATTTCCAATCTCCTTGAAGCAGCCTGGTCCAAGGGGCTCTCTTCTTCAGTGCTATATTAAACGAAATCACAGTAATAAAACATATTATCTGTTTCTTGGTTTAAACCAAGCCTCAACTGAGGATGGCAAGTTCCTTCTTTCTGCACGCAAGTGTCGACGTGCAACTCACACTGACTATATCATTTCTCTTAACTGTGATGATGTCTCAAGAGGGAGTAATACCTATATTGGGAAGCTGAGGTCAAACTTTTTGGGCACCAAATTCACTGTGTATGATGCACATCCTCCAATTTATGGAGCCAAAGTTACAAAGTCTCGTTCCACCAGGCTAGTCAGTCTGAAGCAAGTTTCTCCCAGACTTCCTTCTGGCAACTACCCCATTGCTCATGTCTCGTATGATCTGAATGTTTTGGGCTCTAGAGGCCCTAGAATAATGCACTGTGTTATGGATGCCATCCCTGCCTCAGCTGTTGAACCTGGAGGTGTGGCCCCAACACAAACTCAATTTCTTCATAGCAGAATTGATACTTCTCCATCCATCCCTTTCTTCAGATCAAAATCAACCCGCATGGATAGTCTCACGTCAGAACCTTTGACTTGTCAAGAGGAGGGGATGCTGGTACTGCAAAACAAGTCCCCCAGGTGGCATGAACAACTTCAATTCTGGTGTCTTAACTTCAACGGACGTGTGACAGTTGCTTCAGTTAAAAATTTCCAGCTGGTTGCTTCTCCAAAAAATGGAGTTTCTGAGCAGGCTCAGGAAAATGTTATTCTACAGTTTGGAAAAGTTGGTAAGGATGTATTCACCATGGATTATCAATATCCAATCTCCGCCTTTGAAGCATTTGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1203 0.448 MSFRSIIAERKGFEFKFGYSMRSRSQSHSDAIVQDRLVVLDGLKQSCWANMPPELLRDVLMRIEASEDSWPARKHVVACAGVCRSWREIMKEIVKSPQISGNLTFPISLKQPGPRGSLLQCYIKRNHSNKTYYLFLGLNQASTEDGKFLLSARKCRRATHTDYIISLNCDDVSRGSNTYIGKLRSNFLGTKFTVYDAHPPIYGAKVTKSRSTRLVSLKQVSPRLPSGNYPIAHVSYDLNVLGSRGPRIMHCVMDAIPASAVEPGGVAPTQTQFLHSRIDTSPSIPFFRSKSTRMDSLTSEPLTCQEEGMLVLQNKSPRWHEQLQFWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1198 400 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 1 399 - -
Vra8g1198 400 Pfam F-box domain 48 94 IPR001810 GO:0005515
Vra8g1198 400 Pfam Tub family 109 395 IPR000007 -
Vra8g1198 400 PANTHER TUBBY-RELATED 1 399 - -
Vra8g1198 400 SUPERFAMILY Tubby C-terminal domain-like 97 400 IPR025659 -
Vra8g1198 400 Gene3D Tubby Protein; Chain A 106 400 IPR025659 -
Vra8g1198 400 ProSitePatterns Tub family signature 2. 385 400 IPR018066 -
Vra8g1198 400 PRINTS Tubby superfamily signature 163 179 IPR000007 -
Vra8g1198 400 PRINTS Tubby superfamily signature 179 203 IPR000007 -
Vra8g1198 400 PRINTS Tubby superfamily signature 228 255 IPR000007 -
Vra8g1198 400 PRINTS Tubby superfamily signature 312 329 IPR000007 -
Vra8g1198 400 PRINTS Tubby superfamily signature 330 346 IPR000007 -
Vra8g1198 400 PRINTS Tubby superfamily signature 357 376 IPR000007 -
Vra8g1198 400 PRINTS Tubby superfamily signature 378 400 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1198 Vra-Chr8 27207881 27211766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1198 1 400 TUB Transcription Factor Family AT2G47900 73.544 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vra8g1198 Tub 1.4e-106 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1198 K19600 - gmx:100809257 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1198 8 27207881 27211766 Vra8g1198 8 27207881 27211766 ECH