Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1192 ATGGCGGAGGTGAAGGAAGAGAGTAAATCGAGTAGCGAGGAGAGTGTGAAGCTGTTCGTAGGTCAAGTGCCGAAGCGCATGACGGAGGATGAAGTGCTTGCAATGTTCAAGGAGTTCGCTTTGGTTGACGAGGTCAACATCATCAGAGACAAAATTTCTCGTGCCTCCCGAGGATGCTGCTTTCTGATTTGTCCGTCCAGGGAAGAAGCGGATAAGGCGGTCAATGCCTGTCACAACAAGAAAACGCTGCCCGGGGCTTCCAGTCCGTTGCAAGTGAAGTATGCTGATGGCGAATTGGAAAGATTAGAACACAAACTCTTTATTGGCATGCTTCCAAAGAACATTTCTGAAGATGAGGTCTCGGATCTTTTCTCAAAGTATGGAAACATAAAGGATTTACAGATTTTAAGAGGTTCTCAGCAGACAAGTAAAGGGTGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCCGTAGCTGCTCTTGAGGCAATCAATGGAAAGCATACAATGGAGGGTTCAGGTGTTCCTTTGGTTGTTAAATGGGCAGATACTGAAAAGGAAAGACAGGCTCGAAGGGCTCAAAAAGCACAGTCCCAAGTTTCTAACATGCCTCATGCTGATACTCAACAAGCCTCATTATATGGAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTACCAGGCTCCTGGCAGTTATGGGCTCGTGCCATACCGTTTTCCACCAATGCAGAATCAACCAGGTTTTCATAATATGAACATGAACCAAGTAAATGCAGTGAGGCCTGAGCTTGGTCACAGTATGAACCCTAGAAGTTATCCTGCGCCTCCTGCAAGTTACATGGGCTCATATCCTGCAATGCCAGGTGGGAATAGCAACTATTCATCTTCAGGTGCCAGTAAAAGTTCCAATGGTCAGATTGAAGGACCACCCGGTGCCAATTTATTTATTTATCACATTCCTCAAGAATACGGAGATCAAGAGCTTGCAAATGCATTTCAACAGTTTGGTAGAGTTTTGAGTGCTAAAATTTTTGTTGATAAAGCGACTGGCGTAAGCAAATGTTTTGGGTTTGTTAGTTACGATACTCCAGAAGCTGCCCAATCTGCCATTAGTATGATGAACGGTTGCCAATTAGGTGGTAAGAAATTAAAGGTTCAGCTCAAGAGGGATAACAAACAGAGTAAGCTTTACTGA 1206 0.442 MAEVKEESKSSSEESVKLFVGQVPKRMTEDEVLAMFKEFALVDEVNIIRDKISRASRGCCFLICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEDEVSDLFSKYGNIKDLQILRGSQQTSKGCAFLKYETKEQAVAALEAINGKHTMEGSGVPLVVKWADTEKERQARRAQKAQSQVSNMPHADTQQASLYGALPMGYVPPYNGYGYQAPGSYGLVPYRFPPMQNQPGFHNMNMNQVNAVRPELGHSMNPRSYPAPPASYMGSYPAMPGGNSNYSSSGASKSSNGQIEGPPGANLFIYHIPQEYGDQELANAFQQFGRVLSAKIFVDKATGVSKCFGFVSYDTPEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKLY* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1192 401 SUPERFAMILY RNA-binding domain, RBD 104 396 IPR035979 GO:0003676
Vra8g1192 401 SMART rrm1_1 105 180 IPR000504 GO:0003723
Vra8g1192 401 SMART rrm1_1 17 93 IPR000504 GO:0003723
Vra8g1192 401 SMART rrm1_1 317 390 IPR000504 GO:0003723
Vra8g1192 401 Gene3D - 290 393 IPR012677 -
Vra8g1192 401 CDD RRM1_2_CELF1-6_like 18 93 - -
Vra8g1192 401 CDD RRM3_CELF1-6 318 390 - -
Vra8g1192 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 394 IPR000504 GO:0003723
Vra8g1192 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 184 IPR000504 GO:0003723
Vra8g1192 401 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 8 292 - -
Vra8g1192 401 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 306 388 - -
Vra8g1192 401 Gene3D - 100 193 IPR012677 -
Vra8g1192 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 97 IPR000504 GO:0003723
Vra8g1192 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 82 IPR000504 GO:0003723
Vra8g1192 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 168 IPR000504 GO:0003723
Vra8g1192 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 388 IPR000504 GO:0003723
Vra8g1192 401 PRINTS Paraneoplastic encephalomyelitis antigen family signature 16 31 IPR002343 GO:0003723|GO:1990904
Vra8g1192 401 PRINTS Paraneoplastic encephalomyelitis antigen family signature 109 124 IPR002343 GO:0003723|GO:1990904
Vra8g1192 401 PRINTS Paraneoplastic encephalomyelitis antigen family signature 124 136 IPR002343 GO:0003723|GO:1990904
Vra8g1192 401 PRINTS Paraneoplastic encephalomyelitis antigen family signature 165 182 IPR002343 GO:0003723|GO:1990904
Vra8g1192 401 CDD RRM1_2_CELF1-6_like 105 180 - -
Vra8g1192 401 Gene3D - 2 99 IPR012677 -
Vra8g1192 401 PANTHER RNA BINDING PROTEIN 306 388 - -
Vra8g1192 401 PANTHER RNA BINDING PROTEIN 8 292 - -
Vra8g1192 401 SUPERFAMILY RNA-binding domain, RBD 10 99 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1192 Vra-Chr8 27143982 27148575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1192 18 400 Eukaryotic Initiation Factors Gene Family AT2G23350 22.333 2.37e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1192 K13207 - gmx:100796156 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1192 8 27143982 27148575 Vra8g1192 8 27143982 27148575 ECH
Vra3g0659 3 7102969 7107777 Vra8g1192 8 27143982 27148575 PCT