Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1189 ATGAAGATCGGAATTTTGCTATGTGTTGCACTTTTTCTTGGGGTTTGTCAAGGAGGTAGCCTGAGGAAAAATTTCTACCGCGATTCCTGCCCTCAAGCCGAGGACATCATTAAGAACCAAACACAACAGCACGTGTCTGCTAATCCCAATTTGCCAGCCAAGTTGATTAGAATGCATTTTCATGATTGTTTTGTCAGGGGCTGTGATGCGTCGGTTTTGTTGAACTCTACTGCGAATAACACGGCAGAGAGGGACGCTATTCCAAATCTTTCTTTGGCTGGCTTTGATGTCATAGATGCCATAAAAAGTGCAGTGGAAGCAAAATGTCCCAAAACTGTATCTTGTGCTGACATACTGGCATTGGCAGCAAGAGATGCTGTTTCTGTCCAATTTAATAAACCTATGTGGGAAGTTCTCACTGGTAGAAGAGATGGCACGGTATCGACAAGTAACGAAGCCTTGGCAAATATCCCAGCACCTTTCTTCAACCTCACCCAACTCAGACAGAGTTTTGCTAGCAAAGGTCTCACTTTGCATGATCTGGTTGTATTATCAGGGGCACACACAATTGGAGTTGGGCATTGCAATTTGTTCAGTAACAGGCTTTATAATTTCACCGGGAAAGGTGATCAAGACCCTTCTTTGAATGGAACCTATGCTGCGTTCTTGAAGACGAAATGCCAGAGTCTGAGTGACACAAGCACAACGGTGGAAATGGACCCTGGAAGCTCGACCAATTTCGATAGTGATTATTATCCTAACCTTCTCCAGAAGAAGGGTCTGTTCCAGTCAGACGCTGCCCTTCTAACACTGAATCAATCAGCAGGTATAGCTGGAGAGTTGGTGAATGAAGACAAGTTCTTCACAGAGTTCGCACAATCAATGAAGAGAATGGGAAACATTGAGGTCCTCACTGACTCTGCCGGAGAAATACGCAACAAGTGTTCTGTTGTCAACTCATAA 963 0.4434 MKIGILLCVALFLGVCQGGSLRKNFYRDSCPQAEDIIKNQTQQHVSANPNLPAKLIRMHFHDCFVRGCDASVLLNSTANNTAERDAIPNLSLAGFDVIDAIKSAVEAKCPKTVSCADILALAARDAVSVQFNKPMWEVLTGRRDGTVSTSNEALANIPAPFFNLTQLRQSFASKGLTLHDLVVLSGAHTIGVGHCNLFSNRLYNFTGKGDQDPSLNGTYAAFLKTKCQSLSDTSTTVEMDPGSSTNFDSDYYPNLLQKKGLFQSDAALLTLNQSAGIAGELVNEDKFFTEFAQSMKRMGNIEVLTDSAGEIRNKCSVVNS* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1189 320 PANTHER PEROXIDASE 25-RELATED 8 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra8g1189 320 PRINTS Haem peroxidase superfamily signature 52 66 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra8g1189 320 PRINTS Haem peroxidase superfamily signature 113 130 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra8g1189 320 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra8g1189 320 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra8g1189 320 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra8g1189 320 PANTHER PEROXIDASE 8 318 - -
Vra8g1189 320 CDD secretory_peroxidase 21 318 IPR033905 GO:0004601|GO:0042744
Vra8g1189 320 ProSiteProfiles Plant heme peroxidase family profile. 20 319 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra8g1189 320 Gene3D - 24 319 - -
Vra8g1189 320 PRINTS Plant peroxidase signature 30 49 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra8g1189 320 PRINTS Plant peroxidase signature 54 74 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra8g1189 320 PRINTS Plant peroxidase signature 93 106 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra8g1189 320 PRINTS Plant peroxidase signature 112 122 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra8g1189 320 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra8g1189 320 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra8g1189 320 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra8g1189 320 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra8g1189 320 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra8g1189 320 SUPERFAMILY Heme-dependent peroxidases 21 319 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vra8g1189 320 Pfam Peroxidase 38 278 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra8g1189 320 Gene3D Peroxidase, domain 2 158 298 - -
Vra8g1189 320 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1189 Vra-Chr8 27095529 27097371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1189 3 320 Peroxidase AT1G05260 57.407 3.48e-123 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1189 K00430 - gmx:100806595 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1189 8 27095529 27097371 Vra8g1189 8 27095529 27097371 ECH
Vra3g0656 3 7077780 7079185 Vra8g1189 8 27095529 27097371 PCT