Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1187 ATGGGGTCGAAACCGTGGCTTTACCCTGCTTCCACCTATAGAACTTTGGAAACTTTCTGGGATACCGATGAGGACGCGCCTGGTCCTCGTTGTGGACACACCCTCACTGCAGTTGCTGCCACCAAGACGCAGGGTCCCCGTTTGATCCTGTTTGGCGGCGCCACTGCCATTGAAGGAGGATCTTCCTCCGCTCCTGGCATTAGGTTAGCTGGAGTCACAAATACCGTTCATTCATATGACGTGCAAACTAGAAAATGGACTAGTCTTAAACCGGCCGGGGAGCCACCTTCTCCTAGAGCTGCTCATGCAGCTGCTGCAGTTGGTACCATGGTTGTTTTTCAGGGTGGGATAGGACCAGCTGGGCATTCTACCGATGATCTCTATGTGCTTGACTTGACCAACGATAAATACAAATGGCACAGGGTTGTGGTACAAGGGCAAGGACCCGGACCTCGTTATGGCCATGTAATGGATTTGGTTGCTCAGAGATACCTAGTAACTGTCAGTGGAAATGATGGGAAAAGAGTTGTATCTGACGCTTGGGTTTTGGATACTGCTCAAAAACCTTATGTGTGGCAGAAGTTGAATCCAGAAGGTGACAGACCTTCTGCAAGAATGTACGCAACTGCTAGTGCCCGCTCAGATGGAATGTTTTTACTCTGTGGTGGAAGAGACTCTTCTGGAGCTCCACTAGCAGATGCCTATGGACTGCTCATGCATAGGAATGGCCAGTGGGAATGGACCCTTGCACCTGGAGTTTCCCCTTCGCCAAGGTATCAACATGCCGCGGTTTTTGTTGGTGCACGATTACATGTTACGGGAGGTGTTCTTAGGGGTGGACGGTCCGTGGAAGGTGAAGCATCCATTGCAGTATTGGACACTGCTGCTGGGGTTTGGTTGGACAGAAATGGCATTGTATCCTCCTCACGCTCAAACAAAGGTCATGATTATGACCCTTCTTTGGAGCTTATGCGTCGTTGTCGCCATGCAGCAGCAGCTGTTAGTACTCATATATTTATCTATGGTGGGCTAAGAGGAGATATATTACTAGACGATTTCTTAGTAGCTGAAAATTCACCTTTGCAGTCTGACATTAATTCTCCTGACAGAGCTTCATCTGTTACAAGCTCCAAACCAAGTCAATCTAACTTAAATTATAATGTAACAACGCCAAAGTTGGATGGTGGACCAGACATTCTTTCATCTAGTGGCTTCGGCATGGACAGAAATTCATTGGAGAAACTGAGGGAAGCATCAGCTGCTGAAGCTGAGGCAGCGACTGCTGTCTGGCAAGCTGTGCAGGCCATATCCAGTAGTCCTGCTGAAGAAACATCTGCGTCAGATGAAAACTCACAAGCTGCCGAAACCGTTTCAGATGGAAGTGACACAGAGGGAGATGTTCGCCTTCATCCTAGAGCTGTTGTAGTTGCAAAGGAGGCTGTTGGTAACCTGGGTGGAATGGTGAGGCAATTATCGCTAGATCAATTTGAAAATGAAAGTAGACGCATGATTCCCATAAATAATGATTTGCCATATCCTACAAAGAAGTTCACCAGGCAGAAATCTCCTCAGGGATTACATAAAAAGATAATTTCAACTTTGCTTAGGCCTCGCAACTGGAAAGCTCCTGCAAACAGGCGGTTCTTCTTGGATTCTTATGAAGTGGGTGAACTTTGCTATGCAGCCGAGCAAATATTTATGCATGAACCAACTGTTCTTCAGCTTAAAGCTCCTGTTAAAGTATTTGGTGATCTTCATGGTCAGTTTGGTGATTTGATGCGGCTATTTGATGAATATGGATTTCCTTCTACTGCAGGAGACATTACCTATATTGACTACCTGTTTTTGGGAGATTACGTTGATCGAGGACAGCACAGCTTGGAAACCATTACCTTACTACTTGCTCTTAAGATTGAATATCCTGATAATGTTCACTTGATACGAGGAAATCACGAAGCTGCTGACATAAATGCATTGTTTGGTTTTCGTATTGAGTGCATTGAAAGAATGGGTGAAAATGATGGTATATGGGCATGGACACGATTCAATCAACTTTTTAACTATCTTCCATTAGCTGCTCTTATTGAAAAGAAAATTATCTGTATGCATGGTGGCATAGGAAGGTCTATCAATTCAGTAGAACAAATAGAGAAGCTTGAAAGACCCATAACAATGGATGCAGGATCTATTATTTTAATGGACCTTCTATGGTCTGATCCCACAGAAAATGACAGTGTAGAGGGTTTGAGACCAAATGCTAGAGGCCCAGGGCTTGTCACTTTTGGTCCTGATCGCGTCACAGACTTCTGCAAGAAAAATAAATTACAGCTCATTATAAGGGCCCATGAATGTGTCATGGATGGTTTTGAACGATTTGCCCAGGGACAACTAATCACCCTTTTTTCTGCTACTAATTATTGTGGAACTGCAAACAATGCGGGAGCTATACTGGTAGTTGGCAGGGGTTTGGTTGTGGTTCCAAAATTAATTCATCCTTTACCACCTCCCCTTCAGTCTCCTGAAACTTCTCCCGAGCGTGGTATGGATGAGACATGGATGCAGGAGCTTAATATTCAGAGGCCACCAACTCCTACTAGGGGTAGACCTCAACCAGACCTTGACCGTGGTTCACTAGCATATATATGA 2646 0.4516 MGSKPWLYPASTYRTLETFWDTDEDAPGPRCGHTLTAVAATKTQGPRLILFGGATAIEGGSSSAPGIRLAGVTNTVHSYDVQTRKWTSLKPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKYKWHRVVVQGQGPGPRYGHVMDLVAQRYLVTVSGNDGKRVVSDAWVLDTAQKPYVWQKLNPEGDRPSARMYATASARSDGMFLLCGGRDSSGAPLADAYGLLMHRNGQWEWTLAPGVSPSPRYQHAAVFVGARLHVTGGVLRGGRSVEGEASIAVLDTAAGVWLDRNGIVSSSRSNKGHDYDPSLELMRRCRHAAAAVSTHIFIYGGLRGDILLDDFLVAENSPLQSDINSPDRASSVTSSKPSQSNLNYNVTTPKLDGGPDILSSSGFGMDRNSLEKLREASAAEAEAATAVWQAVQAISSSPAEETSASDENSQAAETVSDGSDTEGDVRLHPRAVVVAKEAVGNLGGMVRQLSLDQFENESRRMIPINNDLPYPTKKFTRQKSPQGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMHEPTVLQLKAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPDNVHLIRGNHEAADINALFGFRIECIERMGENDGIWAWTRFNQLFNYLPLAALIEKKIICMHGGIGRSINSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVTDFCKKNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPPLQSPETSPERGMDETWMQELNIQRPPTPTRGRPQPDLDRGSLAYI* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1187 881 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 1 881 - -
Vra8g1187 881 MobiDBLite consensus disorder prediction 361 404 - -
Vra8g1187 881 MobiDBLite consensus disorder prediction 834 881 - -
Vra8g1187 881 Gene3D - 5 194 IPR015915 GO:0005515
Vra8g1187 881 Pfam Calcineurin-like phosphoesterase 578 785 IPR004843 GO:0016787
Vra8g1187 881 SUPERFAMILY Kelch motif 73 357 IPR015915 GO:0005515
Vra8g1187 881 Gene3D - 195 363 IPR015915 GO:0005515
Vra8g1187 881 ProSitePatterns Serine/threonine specific protein phosphatases signature. 647 652 IPR006186 GO:0016787
Vra8g1187 881 Gene3D - 513 842 IPR029052 -
Vra8g1187 881 Pfam Galactose oxidase, central domain 115 155 - -
Vra8g1187 881 MobiDBLite consensus disorder prediction 439 466 - -
Vra8g1187 881 SUPERFAMILY Metallo-dependent phosphatases 531 842 IPR029052 -
Vra8g1187 881 Pfam Serine-threonine protein phosphatase N-terminal domain 529 576 IPR031675 -
Vra8g1187 881 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 881 - -
Vra8g1187 881 MobiDBLite consensus disorder prediction 439 459 - -
Vra8g1187 881 Pfam Galactose oxidase, central domain 29 96 - -
Vra8g1187 881 SMART pp2a_7 550 836 IPR006186 GO:0016787
Vra8g1187 881 PIRSF STPPP_BSU1 1 881 IPR012391 GO:0004721|GO:0009742
Vra8g1187 881 PRINTS Serine/threonine phosphatase family signature 578 605 IPR006186 GO:0016787
Vra8g1187 881 PRINTS Serine/threonine phosphatase family signature 613 640 IPR006186 GO:0016787
Vra8g1187 881 PRINTS Serine/threonine phosphatase family signature 646 670 IPR006186 GO:0016787
Vra8g1187 881 PRINTS Serine/threonine phosphatase family signature 684 710 IPR006186 GO:0016787
Vra8g1187 881 PRINTS Serine/threonine phosphatase family signature 714 741 IPR006186 GO:0016787
Vra8g1187 881 PRINTS Serine/threonine phosphatase family signature 774 794 IPR006186 GO:0016787
Vra8g1187 881 PRINTS Serine/threonine phosphatase family signature 796 812 IPR006186 GO:0016787
Vra8g1187 881 MobiDBLite consensus disorder prediction 361 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1187 Vra-Chr8 27059947 27072825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1187 579 777 Calmodulin-binding Proteins AT5G63870 33.478 9.52e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1187 K01090 - gmx:100805538 1693.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1187 8 27059947 27072825 Vra8g1187 8 27059947 27072825 ECH