Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1180 ATGAAGGAAAAGGTGGATTCCCCCGTTACAGTTCTGGAAGACTATTTCAGGAGCTCGGATTCAGAATCAAGTTCTTCCAAAGATCCTGCAGTGGATTCTGAATCTCAAGACCTTTCAAAACATGCTTCTAGGTGGCATGCATTTCGTCACTTGTTTAGAAGTGGGTCGAAGAAACATACGAACACGTTGCACCCTCTCGGTGCCCTCAAGCTCTCCAAAAGAATGAGCACTAGCATGAGGGAAACCATTCTCCCAAGTTGTTTCTTGGATGCAAATGCATCCCCTTGCAGGTCGCCGTGGAAGATCTTTTCTCATCATGAGATTCAGGTTGCAACCAATTCATTTAGCCAAGAAAATTTGATTGGGAAAGGTGGCTATGCTGAAGTCTACAAAGGGTGTTTGCCAAATCGTCAGCTAGTGGCAATTAAACGTTTAACAAGAGGAACAGCTGATGAAATCATAGGGGATTTCTTATCAGAGCTCGGTGTAATGGCTCATGTAAACCATCCCAATACTGCTAAGCTGGTTGGCTATGGAGTGGATGGTGGAATGTATCTGGTTCTTGAGTTGTCTGAAAAAGGAAGCCTAGCTTCAGTTCTTTATGGTTCCAAGGAGAAGCTACCATGGTGTACAAGGAACAAAATTGCATTAGGAATAGCTAAGGGTATACTATATCTTCATGAGGGTTGTCAAAGAAGAATTATCCACAGGGATATAAAAGCAGCCAATATCTTGCTCACGGAGGATTTTGAGCCTCAGATTTGTGATTTCGGGCTAGCAAAATGGTTGCCAGAAAATTGGACTCACCACACCGTTTCAAAATTTGAAGGAACTTTCGGTTACCTTGCACCTGAGTACTTGCTACATGGCATAGTGGACGAGAAAACGGACATATTTGCCTTTGGTGTGTTGCTATTGGAATTAGTGAGTGGGCGTCGAGCACTTGATTATTCACAGCAAAGCCTTGTGTTGTGGGCAAAACCATTGCTGAAAAAAAATGATATTATGGAGCTCATTGATCCTTCACTAGCAGGTGACTTCGACTCCAGGCAAATGAATCTTATGCTCTTAGCTGCTTCTTTGTGCATACAACAGTCCTCGATTCGTCGCCCCTCTACAAGACAGGTTGTACAGCTTCTGAACGGCAACCTTAGCTGCTTTAAGGGCATGAAGAAAACCCGAATGCCGTTCTTCAGAAGAGTCTTCCGAGAAGAACTTCATGATTCCGAATAG 1233 0.4363 MKEKVDSPVTVLEDYFRSSDSESSSSKDPAVDSESQDLSKHASRWHAFRHLFRSGSKKHTNTLHPLGALKLSKRMSTSMRETILPSCFLDANASPCRSPWKIFSHHEIQVATNSFSQENLIGKGGYAEVYKGCLPNRQLVAIKRLTRGTADEIIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMYLVLELSEKGSLASVLYGSKEKLPWCTRNKIALGIAKGILYLHEGCQRRIIHRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHTVSKFEGTFGYLAPEYLLHGIVDEKTDIFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKNDIMELIDPSLAGDFDSRQMNLMLLAASLCIQQSSIRRPSTRQVVQLLNGNLSCFKGMKKTRMPFFRRVFREELHDSE* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1180 410 MobiDBLite consensus disorder prediction 1 37 - -
Vra8g1180 410 MobiDBLite consensus disorder prediction 14 32 - -
Vra8g1180 410 ProSitePatterns Protein kinases ATP-binding region signature. 121 143 IPR017441 GO:0005524
Vra8g1180 410 SMART serkin_6 115 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1180 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Vra8g1180 410 Pfam Protein kinase domain 116 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1180 410 Gene3D Phosphorylase Kinase; domain 1 90 189 - -
Vra8g1180 410 SUPERFAMILY Protein kinase-like (PK-like) 96 380 IPR011009 -
Vra8g1180 410 ProSiteProfiles Protein kinase domain profile. 115 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1180 410 Gene3D Transferase(Phosphotransferase) domain 1 192 394 - -
Vra8g1180 410 PANTHER PROTEIN KINASE FAMILY PROTEIN 1 408 - -
Vra8g1180 410 PANTHER OS08G0249100 PROTEIN 1 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1180 Vra-Chr8 26931338 26935148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1180 102 376 Trihelix Transcription Factor Family AT1G68690 42.308 3.75e-68 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vra8g1180 Pkinase 4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1180 - - gmx:100780587 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1180 8 26931338 26935148 Vra10g0600 10 11879547 11885197 ECH
Vra8g1180 8 26931338 26935148 Vra8g1539 8 32326935 32331106 ECH
Vra8g1180 8 26931338 26935148 Vra8g1180 8 26931338 26935148 ECH
Vra10g1055 10 16290856 16294574 Vra8g1180 8 26931338 26935148 ECH
Vra3g0066 3 744267 747346 Vra8g1180 8 26931338 26935148 PCT