Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1179 ATGACTCCTCTCAACCTCCTCCTCCTCTTCTGCTTCCTTTCTCTCCCATACTCTTCCTTATCCGCCTGTCCCCTCAACTTCACCGTCCTCGGCACCACCAAGCCTTCCTCCTTCGACTCCTCCCGCTGCCAGGTCATCAGCCAGGCCCTCCGCCTCGTCCAGTCCGACTACCTCCGCCGTAGCGGTTTCTTCCTCGCGCCCTCCAACGCCTCCGACTCCTGCTGGCAAAGCTTTCAGTCCTACGTTAACCTCTTCGACCCCACCTACGACATTCGCTCCTCCTGTGGCTACCAAACCTCCTGGATCTCCCAGGGCTGCGTCAACGTCACCACCAGACAAGAGTTTGAAGCTCTGGTTCCTCAATCCGCTCTTCAATCCGTAGGAAAAAACTGCAACCAATCGCTCGAGAATAATTCTCCCTGCGCCCTCTGCACCTCCTCCCTCTCCAATATCCCGCACTTGGGACAGTCCGTCGGCAACCTCACCAGCTGCACTGATTATTCTTCTATCTACGCCGCCGCCTTCGCCAACTCCCGCGGCCCCTCCGACCTCGGCACCGCCAAGTGCTTGTTCTCCCTCGAATTTCCCCACGCCGGTTCCTCCGCCTCCAAAAGAAGAAAGCTTCTTTTTGGGCTTGTTTCTGTTGTCTGTGTCTTGGTCTTCTGCTTGCTGGCTTTCGGCTTTTGGGCTTATCGCAAGTTTGAAAAGAAGGTGGGTCGGGATATGGATGTTCGTGTTGTGGAAACCGGTTTCATTTCTGGGTTGGATTCCATGGACCAGAGCACCACCTTGATCAGGTTCACTTTCGATGATATTAAGAAGGCAACTAAGAATTTCTCCCGGGATAACATAGTTGGAAGAGGGGGTTACGGGAATGTGTACAAAGGGTTGCTTCCTGATGGGAGTGAGGTTGCGTTTAAGAGGTTCAAGAATTGTTCGGCTGCTGGTGACGCGAGCTTTACTCATGAGGTTGAGGTTATTGCTAGCGTGAGGCATGTTAACCTTGTTGCCTTGAGAGGTTATTGTTCTGTCACGACTCGTTTAGAAGGTTACCAGAGGATTATTGTTTGTGATATGGTGAAAAACGGGAGTCTCCACGACCATTTGTTTGGTTCCAATGGGGTGAAACTGAGTTGGCCAATTCGTCAGCAGATTGCTCTAGGCACCGCTAGAGGGCTGGCTTATTTGCATTATGGGGCTCAACCTGCAATAATTCATAGGGATATTAAAGCAAGTAATATACTTTTGGATGATAAGTTTGAAGCCAAGGTTGCTGATTTTGGACTGGCGAAGTTTAACCCTGAGGGGATGACGCATATGAGCACTAGGGTGGCTGGAACCATGGGGTATGTTGCTCCGGAATATGCTTTGTATGGACAGTTGACAGAGAGAAGTGATGTGTTCAGTTATGGGGTTGTGCTTCTTGAGCTTTTGAGTGGTAGGAAGGCGCTTCAGATGAACAATGATGGTCAACCATCTGCTTTAACCGATTGGGCTTGGTCATTAGTTAGAACCGGAAAGGCTTTGGATGTAATTGAAGATGACATGCCACAACCTGGTTCACCACAAGTTCTTGAGAAGTATGTGCTAATTGCTGTGCTTTGTTCTCATCCACAGTTGTATGCTAGGCCAACAATGGATCAGGTTGTTAAAATGATGGAGACCGATGAATCAGTGCCCTCAATACCTGAACGCCCAATCCCTCTTGTCGCTGGGAGGATTGATATTGATAGATCTGTGAGCAGTAGTGGCTCTGGTCAGCTCTCTAGTCCAACGGGTTATCAAGCATATACTCTAGAAACTGATAGCCAACTAACTAATTCTAGGGAAGAAAGAAGCTCCAGCTCCAGGATTTTGTGTACAGATTGA 1869 0.4955 MTPLNLLLLFCFLSLPYSSLSACPLNFTVLGTTKPSSFDSSRCQVISQALRLVQSDYLRRSGFFLAPSNASDSCWQSFQSYVNLFDPTYDIRSSCGYQTSWISQGCVNVTTRQEFEALVPQSALQSVGKNCNQSLENNSPCALCTSSLSNIPHLGQSVGNLTSCTDYSSIYAAAFANSRGPSDLGTAKCLFSLEFPHAGSSASKRRKLLFGLVSVVCVLVFCLLAFGFWAYRKFEKKVGRDMDVRVVETGFISGLDSMDQSTTLIRFTFDDIKKATKNFSRDNIVGRGGYGNVYKGLLPDGSEVAFKRFKNCSAAGDASFTHEVEVIASVRHVNLVALRGYCSVTTRLEGYQRIIVCDMVKNGSLHDHLFGSNGVKLSWPIRQQIALGTARGLAYLHYGAQPAIIHRDIKASNILLDDKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSYGVVLLELLSGRKALQMNNDGQPSALTDWAWSLVRTGKALDVIEDDMPQPGSPQVLEKYVLIAVLCSHPQLYARPTMDQVVKMMETDESVPSIPERPIPLVAGRIDIDRSVSSSGSGQLSSPTGYQAYTLETDSQLTNSREERSSSSRILCTD* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1179 622 Pfam Protein kinase domain 280 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1179 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 404 416 IPR008271 GO:0004672|GO:0006468
Vra8g1179 622 ProSitePatterns Protein kinases ATP-binding region signature. 285 307 IPR017441 GO:0005524
Vra8g1179 622 ProSiteProfiles Protein kinase domain profile. 279 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1179 622 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 12 607 - -
Vra8g1179 622 SMART serkin_6 279 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1179 622 Gene3D Transferase(Phosphotransferase) domain 1 360 561 - -
Vra8g1179 622 SUPERFAMILY Protein kinase-like (PK-like) 261 568 IPR011009 -
Vra8g1179 622 Gene3D Phosphorylase Kinase; domain 1 251 358 - -
Vra8g1179 622 PANTHER OS01G0253100 PROTEIN 12 607 IPR045271 GO:0004714|GO:0006468
Vra8g1179 622 MobiDBLite consensus disorder prediction 602 622 - -
Vra8g1179 622 Pfam SPARK 20 157 IPR043891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1179 Vra-Chr8 26905025 26907831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1179 7 608 Receptor kinase-like Gene Family AT2G48010 62.603 0.0 771
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vra8g1179 Pkinase 2.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1179 - - gmx:100800760 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1179 8 26905025 26907831 Vra8g1179 8 26905025 26907831 ECH
Vra3g0068 3 765070 767485 Vra8g1179 8 26905025 26907831 PCT