Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1172 ATGACAATGGAGAATTTTCTACGAAGCAAAGAGTTATGGGAGATTATAGAAGAAGGAATTCCAAAGCTTGAAACTACACCAACAGAAATGCAACGACAAAAAGTATCTGATGTCAATCTTAAAGATCTCAAAGTGAAGAATTATTTGTTTCAAGCTATTGAAAGGGAGATTCTTGAAACTATATTAGACAAAAGCACATCTCAAGCCATATGGCAGTCGATGCAGCAAAAATACCAAGGGTCCACAAGAGTCAAGTGTGCTCAACTAAAAGCTCTACGTCGTGAATTCGAACTCCTAGGAATGAAGGAGGGTGAGAAGGTGGGCACCTATTTGGGAAGAACGCTCAGTATTGTTAATAAGATGAAATCCAATGGTGAAGTGATTAATACAAGCATTGTGGTTAGCAAAATTCTCAGATCGTTAACCCTAAAGTTTAACTACGTTGTGTGCTCAATTGAGGAATCTAATGATTTGAATATCCTCAGCCTTGATGAGCTTCATGGCAGTCTACTGGTTCATGAGCAAAGGATGCAAGACAGTTATTTAGATGAACAGGTGTTAAAAGTCATTCAAGAAGAGAGACCAGTAGTGGGTCGTGGTCGCGGCAAAGGTCGCAGATGTGTGCGACGATGGGCCACTCTTCTGGGTCTTAAAAAATTGAAGCTTTTGAGGATTTCGTCGGAGGATGAACTAGCGGGTATGGATCTTACCCGGCATGGAGGGTTTGCCTATGCCTATGAAGATGATGAGACTCACAAGCATGAGATTCAGTTGAGGAAGGTTGAACCCAACGCCTCTACCCCAACCACTGATGGGGGATTATGA 825 0.4182 MTMENFLRSKELWEIIEEGIPKLETTPTEMQRQKVSDVNLKDLKVKNYLFQAIEREILETILDKSTSQAIWQSMQQKYQGSTRVKCAQLKALRREFELLGMKEGEKVGTYLGRTLSIVNKMKSNGEVINTSIVVSKILRSLTLKFNYVVCSIEESNDLNILSLDELHGSLLVHEQRMQDSYLDEQVLKVIQEERPVVGRGRGKGRRCVRRWATLLGLKKLKLLRISSEDELAGMDLTRHGGFAYAYEDDETHKHEIQLRKVEPNASTPTTDGGL* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1172 274 Pfam gag-polypeptide of LTR copia-type 41 179 - -
Vra8g1172 274 PANTHER - 1 207 - -
Vra8g1172 274 PANTHER - 1 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1172 Vra-Chr8 26759806 26764919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1172 217 269 Inorganic Solute Cotransporters AT4G13510 72.222 6.81e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1172 - - ccaj:109807241 304.293