Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1157 ATGACCATCTCAATGTTCATGTGCAGATTAAGACAACCCATGATAAACATTCCCTGCAGTGGGAAAAAACTGAACTTCAGACAAATTGAGAAAGAGAAAGTAGTGGTTGTAATGGGAGCCACAGGTGCAGGGAAATCAAGGCTGTCCATTGACATAGCCTCATGTTTTCCATCAGAAATCATAAACTCAGACAAAATTCAAGTGTACCAAGGTCTCGACATAGTCACAAACAAAATCCCAAAGGAAGACCAACGTGGGGTGCACCACCACTTACTGGGAACAATAAACCCCGACATAGACTTCACACCCACTGATTTCATTGACACGTCATCATCGGCCATCGACACCATCACCACAGCCCAGAAGCTTCCAATCATCGTTGGCGGCTCCAACTCCTATCTCGAGGCCTTGATCGACGACGACGATTACAAGTTCCGGTCGCGCTACGATTTTCTCTGCATCTGGGTTGACGTGGCAATGCCCGTGCTTCAATCCTACGTGGCGGAACGGGTTGACGACATGTTCCGTAAGGGAATGGTGGAGGAGCTGCGACCCTTTTATAGTCCCGACGGGGATTACTCGAGAGGGATTAGAAGAGCCATTGGGGTTCCTGAATTTGACGAGTATTTTCGGAGGGAGGAGTTTGTGGACGAGGAAACGAAGCAGAGGTTGTCGGAAGATGCGATCAGGGAAATAAAATTGAACACGTGGAAACTTGCCATGAAACAGTTGGGGAAGATTCACAGGCTGAGGAACGTTAAGAGATGGGAGATTCATCGCTTGGACGCCACGCCCGTGTTTCGAAGGCGTGGGGAAGAAGCAAACGAGGCCTGGAAGAAGTTGGTGGCCGAACCGACTGCTATGGTCGTTGCGCGCTTTCTCTATAACTCCAAAAACAATGCCAACGTTGTTTCTGGACTTACACTGTTGCCACCTTCGGAGAATGTTATGGCTGCGGCAACGTGCTAG 969 0.4902 MTISMFMCRLRQPMINIPCSGKKLNFRQIEKEKVVVVMGATGAGKSRLSIDIASCFPSEIINSDKIQVYQGLDIVTNKIPKEDQRGVHHHLLGTINPDIDFTPTDFIDTSSSAIDTITTAQKLPIIVGGSNSYLEALIDDDDYKFRSRYDFLCIWVDVAMPVLQSYVAERVDDMFRKGMVEELRPFYSPDGDYSRGIRRAIGVPEFDEYFRREEFVDEETKQRLSEDAIREIKLNTWKLAMKQLGKIHRLRNVKRWEIHRLDATPVFRRRGEEANEAWKKLVAEPTAMVVARFLYNSKNNANVVSGLTLLPPSENVMAAATC* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1157 322 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 160 258 - -
Vra8g1157 322 Gene3D - 31 294 IPR027417 -
Vra8g1157 322 Pfam IPP transferase 145 244 - -
Vra8g1157 322 Pfam IPP transferase 67 140 - -
Vra8g1157 322 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 24 300 - -
Vra8g1157 322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 189 IPR027417 -
Vra8g1157 322 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 24 300 IPR039657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1157 Vra-Chr8 26589881 26591152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1157 147 294 C2H2 Transcription Factor Family AT2G27760 30.857 2.53e-19 86.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1157 8 26589881 26591152 Vra8g1157 8 26589881 26591152 ECH
Vra3g0089 3 960319 961658 Vra8g1157 8 26589881 26591152 PCT