Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1156 ATGGAAGAGCAAAGTAATGAAGAGAACCCTGTGCAACTAACATCCTGTGACAATGGGGGCACAGCCAATGATGTCTCTCACTCAGCTGAGGGTCATCTCATTCCCAACCCAAAATTTTTCATTGCAGCATCATCTGGAAGAAATGAGAGCCACTGGACTTGCTTTCCAAAACCATCCCATAACTATGTTAAGTATCTTTCAGAATCCTCAACTTATCTGCCAAACACTTCCACTGATTACATGATGGGAGGTAGTTATCTACCTGTTGGCAGCATCACTGATGGCAACGTGGTTAATGGATCAGACAGAAACTTCTTTTACAATGATCCAGGGAAAGTTTGCGCCTTTAAGCCTATTGGTTCTTCAAGTAATGACCTTGAGATTAAGAAGCAGGTGGGGTTTTGGAGGGCTGATGAAGGAGAGGAAGTGATTAAAGTTGAAACTGAAAGTAGTCAAAATTTTCTTTATGCTGAGAGTCATCCTTTATGGACAGCAGATTCTCTTGGAGATAAGCATAATGCTTTACATGATTCAATGGTAATGGTTGGTGCACCTGCTTCACTTCCCAAATCAGGATCCAGCTCCTCAAAAGAGAAAGCACGTGTCACTGACCGTCAACGCAGGCAACGTATCGCTGATAACCTCAAAGCCTTACATGAATTGCTTCCAAATCCAGCAGAGGGAAGTCAAGCATACATACTGGACGATATTATTGACTATGTCAAATATTTACAGCTTCAAATAAAGGAACAAAGTGGAAGTAGATTGCAAGAAGAATCAACTGGTATACCACTAGTTTTTCATGAGGGTTACGGTCATTATATCAACCAAAAGATGCTGAATGAACCCCTTGAGGAGATAATGGGGAAACTACTTGAAGAACATTATGCAGCAGCTGGTCAGCTACTAGAGAGCAAGGGTCTTTTCCTGCTGCCTATGGCTTTGGTTGATGATTTGAATGAGGCTATGCAAACGTTTGGCGAGAGTGCTCTAAATGCTTGA 1002 0.4202 MEEQSNEENPVQLTSCDNGGTANDVSHSAEGHLIPNPKFFIAASSGRNESHWTCFPKPSHNYVKYLSESSTYLPNTSTDYMMGGSYLPVGSITDGNVVNGSDRNFFYNDPGKVCAFKPIGSSSNDLEIKKQVGFWRADEGEEVIKVETESSQNFLYAESHPLWTADSLGDKHNALHDSMVMVGAPASLPKSGSSSSKEKARVTDRQRRQRIADNLKALHELLPNPAEGSQAYILDDIIDYVKYLQLQIKEQSGSRLQEESTGIPLVFHEGYGHYINQKMLNEPLEEIMGKLLEEHYAAAGQLLESKGLFLLPMALVDDLNEAMQTFGESALNA* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1156 333 SMART finulus 201 250 IPR011598 GO:0046983
Vra8g1156 333 MobiDBLite consensus disorder prediction 7 25 - -
Vra8g1156 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 192 255 IPR036638 GO:0046983
Vra8g1156 333 MobiDBLite consensus disorder prediction 1 30 - -
Vra8g1156 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 195 244 IPR011598 GO:0046983
Vra8g1156 333 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 316 - -
Vra8g1156 333 Pfam Helix-loop-helix DNA-binding domain 197 245 IPR011598 GO:0046983
Vra8g1156 333 MobiDBLite consensus disorder prediction 186 206 - -
Vra8g1156 333 CDD bHLH_AtbHLH_like 203 250 IPR045239 -
Vra8g1156 333 Gene3D - 193 262 IPR036638 GO:0046983
Vra8g1156 333 PANTHER TRANSCRIPTION FACTOR BHLH66-LIKE ISOFORM X1 15 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1156 Vra-Chr8 26569979 26574941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1156 202 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 39.024 4.14e-20 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra8g1156 HLH 8.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1156 - - gmx:100788949 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1156 8 26569979 26574941 Vra8g1156 8 26569979 26574941 ECH