Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1148 ATGGCAGAGAGTTCTTCATCATTGGCTGCATCGGCTTCTCCCACTAGGTACGAAGTGTTTCTGAACTTCAGAGGGGAAGACACTCGTGAGAACTTCATTAGTCACCTTTATGCCGCGCTGGAGAGGAAGCACATTGAAACATATATTGATTACAGACTACAAAGGGGTGAAGAAATTTCACCTGCACTGCAAACTGCAATAGAAGAATCAAAGATCTATGTCCTCGTTTTCTCTGAAAACTATGCATTTTCGACGTGGTGTTTGAATGAACTGACTAAGATACTGGATTGCAAGAAAAGATATGGAAGGGATGTGATACCCGTTTTCTACAAGGTGCATCCAACAATTGTCAGAAAACAGGAAGAGAGATACAAAGAAGCATTTGAAGAGCATAAACTGCGGTTTAAGGAAGACATGGGCAAAGTGCAAGGATGGAAGGATGCTCTAACTGAAGCTGCTGGACTCTCCGGCTGGGATTCAAACCTTATCAGGTCAGAACACATTCTTGTTGAAGAAATTATAGATGATATTTTGAAAAAATTGAATCGTTATTCCGTGAGTTATAATCAAGGAATCATCGGCATTGAAAAACATATTGAAGAAATTGGATCCTTGTTGGATCTTGAGTCACCGGATATTCGGACCATAGGAATTTGTGGCATGGGAGGAATGGGAAAAAGTACAATTTCTGAACAATTATATCACACATTGGCAGTGAAGTTTGATTCCCACAGCCTTGTTTTAGATGTTCAAGAAAAACTACAAAGAGAGGGAATACACAATATCATAACAAAATATAGATCTGAGCTTCTAAAGGAAACATCATCCCCTCATTTATCATATTACAATGAACGGCTTAAACGGACAAAGGTCCTCCTCATTCTTGATGATGTGACCGATTCAACTCTACTTAACAAATTAATAGGAGGATGTGATCGTTTTGGGCTAGGTAGTAGAATCATTATCACCAGTAGAGACAGACAAGTACTTAAGAATGCTGGAACTGATGATATCTATGAACTTAAGGAGTTGAACTTTTATGATTCTCTAAAACTTTTTAATTTACATGCTTTTAAACAAAATTCTTCAAAAGAAATTACTTACATGGACTTGTCCATAAAGGTGTTGAGATATGCAAAAGGGGTTCCGTTAGCTCTCCAAAGTTTGGGCTCATTGCTTTATGGCAGACAAAAAGAAGAATGGGAAAGTCAGTTGCAAAAGTTGGAAAAGGGCCAAGATGTTGAAACTTTTAATGTACTAAAATTAAGTTATGATGGGCTTGATGAGGAGCAGAAGAACATATTTCTTGAAATAGCTTGCTTTTACAGGGGACACAACGAGATTGTGGTAGTAGAAACACTAAAGGACTGTGGTTTTTCTTCTGAGATTGGAATGGATGTTCTCAAAGATAAATGTCTCATATCTATCTTGGATGGTAGAATTGTGATGCACGATCTAATACAAGAAATGGGTCAAGAAATTGTTCGTAAAGAGTGTCCTCAACATCCTGGAAAACGCAGTCGATTATTCAAGGCTGACGAAATTCATGAGATTTTAAGAACGAACAAGGGTGTGCCCTTAAATTTTCAAAGTCTCAAGAGGCTCTGTTTCATAGATCTCTCAAACTGTTCTTCCCTTACAATATTTCCATTTGACCTTTCTGAGATTAAATTCCTAAAGAAACTTCGTCTCAGTGGTTGCTCAAAATTGGAAAATTTCCCCGAGATTGAGAACACCATGGAAGATTTAGCGGTTCTCCTCCTAGACTGCACAGCCATACACACACTACCTTCATCCTTGTATCGTTTGGTAGGGCTTCAAGAACTGAGTTTGCGCAGTTGCTCGAATCTTGAGATTATTCCATCTTCCATTGGAAGGCTCACCAGACTATGCAAGTTAGACATTACCTACTGTGCATCACTTCAAACTTTTCCAAGCACCATTTTCAAATTGAAGTTGAGGAAACTTGATTTGTGTGGTTGCTTTAAGTTGAGGACCTTCCCAGAGATCATGGAGCCGACACAAACTTTTGTTCACATTGACTTAACAAAAACGCTTATCAAAGAACTCCCTTCCTCGTTTGGCAATTTGGTTAAGCTTCGATCCCTACAGCTCAATAGTTGCTCTGCTCTCGAGTCACTTCCAAACTCCATTGTTAATCTAAAGCATCTCTGTAAACTTGATTGTTCGGGGTGTTATAAATTAACAGAAATCCCAAGACACATAGGTCGGTTGACGTCATTAGTGGAACTGTCACTGAGTGAAAGCGGAATCGTGAGCCTTCCTGAGAGCATTGCTCATCTTTCGAGCTTGAAATCGCTTGATTTAAGCGATTGCAAAAAGCTTGAATGCATCCCACATATTCCCCCATTTCTAAAACAATTGGTGGCATTGGATTGCACATCTATCAGAGGAGTGATGTTAAACTCAAATTCTCTTGTTCCAAACCTCTCAAACTCTAAAGAGGGTTTCTTCAGATTTCATTTCACCAATGCTCAACAACTGGATTCAGGTGCTCGTGCTAACATTGAGGAGGATGCAAGGCTTAGGATGAGCGACGATGCGTATGGGTCTGTGTGCTTCTGTTTTCCAGGGAGTGCAGTTCCTCATTGGTTCCCTTTTCGCAACGAAGGACCTTCAGTGAGTATAAATGAAGATTTAAGTTTCTGCAGCGATGACAAGCTAATTGGTTTCGCTTTGTGTGTGGTTTTGGGAGTATTAGATACGAATGATATTAAAAGCAGATACAGTTCTTTTGGTTACAGCCTAAAATTTGAATGTGACGATGATGGCACACATATAATTCCAAATAATGATGTGTTAAACAACTATTTCACATGGGGTTATAGTCCCAGACTCCTTGATAAAGATCACATATTTATGTGGAAATTTAACTTGGAGAGCCTAAGGAGGAGAGGCATGAACCTTAGGCTCTGTGATGCTCGCAGCTTCACTTTTGAGATCAGTCCATATCATTATAACTCTCAGTGGCCAGATTACTACTCCGTTGTGAACGAGTTAAAATCAGTTGTCAAAATAAAAGAATGCGGGATGTGCCCTCTTTATAGCAGCGGAAGCAATGTTGCAGAGTCTTCAAGGTAA 3102 0.3946 MAESSSSLAASASPTRYEVFLNFRGEDTRENFISHLYAALERKHIETYIDYRLQRGEEISPALQTAIEESKIYVLVFSENYAFSTWCLNELTKILDCKKRYGRDVIPVFYKVHPTIVRKQEERYKEAFEEHKLRFKEDMGKVQGWKDALTEAAGLSGWDSNLIRSEHILVEEIIDDILKKLNRYSVSYNQGIIGIEKHIEEIGSLLDLESPDIRTIGICGMGGMGKSTISEQLYHTLAVKFDSHSLVLDVQEKLQREGIHNIITKYRSELLKETSSPHLSYYNERLKRTKVLLILDDVTDSTLLNKLIGGCDRFGLGSRIIITSRDRQVLKNAGTDDIYELKELNFYDSLKLFNLHAFKQNSSKEITYMDLSIKVLRYAKGVPLALQSLGSLLYGRQKEEWESQLQKLEKGQDVETFNVLKLSYDGLDEEQKNIFLEIACFYRGHNEIVVVETLKDCGFSSEIGMDVLKDKCLISILDGRIVMHDLIQEMGQEIVRKECPQHPGKRSRLFKADEIHEILRTNKGVPLNFQSLKRLCFIDLSNCSSLTIFPFDLSEIKFLKKLRLSGCSKLENFPEIENTMEDLAVLLLDCTAIHTLPSSLYRLVGLQELSLRSCSNLEIIPSSIGRLTRLCKLDITYCASLQTFPSTIFKLKLRKLDLCGCFKLRTFPEIMEPTQTFVHIDLTKTLIKELPSSFGNLVKLRSLQLNSCSALESLPNSIVNLKHLCKLDCSGCYKLTEIPRHIGRLTSLVELSLSESGIVSLPESIAHLSSLKSLDLSDCKKLECIPHIPPFLKQLVALDCTSIRGVMLNSNSLVPNLSNSKEGFFRFHFTNAQQLDSGARANIEEDARLRMSDDAYGSVCFCFPGSAVPHWFPFRNEGPSVSINEDLSFCSDDKLIGFALCVVLGVLDTNDIKSRYSSFGYSLKFECDDDGTHIIPNNDVLNNYFTWGYSPRLLDKDHIFMWKFNLESLRRRGMNLRLCDARSFTFEISPYHYNSQWPDYYSVVNELKSVVKIKECGMCPLYSSGSNVAESSR* 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1148 1033 Gene3D Ribonuclease Inhibitor 518 651 IPR032675 -
Vra8g1148 1033 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 605 925 IPR044974 GO:0006952
Vra8g1148 1033 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 535 IPR044974 GO:0006952
Vra8g1148 1033 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 531 623 IPR044974 GO:0006952
Vra8g1148 1033 Pfam NB-ARC domain 196 413 IPR002182 GO:0043531
Vra8g1148 1033 SUPERFAMILY L domain-like 482 805 - -
Vra8g1148 1033 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 605 925 - -
Vra8g1148 1033 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 531 623 - -
Vra8g1148 1033 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 13 535 - -
Vra8g1148 1033 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 158 IPR035897 -
Vra8g1148 1033 Pfam TIR domain 17 187 IPR000157 GO:0007165
Vra8g1148 1033 Gene3D Ribonuclease Inhibitor 652 808 IPR032675 -
Vra8g1148 1033 Gene3D - 14 185 IPR035897 -
Vra8g1148 1033 PRINTS Disease resistance protein signature 215 230 - -
Vra8g1148 1033 PRINTS Disease resistance protein signature 285 299 - -
Vra8g1148 1033 PRINTS Disease resistance protein signature 379 393 - -
Vra8g1148 1033 PRINTS Disease resistance protein signature 766 782 - -
Vra8g1148 1033 SMART till_3 16 155 IPR000157 GO:0007165
Vra8g1148 1033 Pfam C-JID domain 863 1024 IPR045344 -
Vra8g1148 1033 Gene3D - 186 338 IPR027417 -
Vra8g1148 1033 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 436 IPR027417 -
Vra8g1148 1033 ProSiteProfiles TIR domain profile. 15 181 IPR000157 GO:0007165
Vra8g1148 1033 Gene3D - 344 428 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1148 Vra-Chr8 26494519 26503698 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1148 12 781 WRKY Transcription Factor Family AT4G12020 30.466 3.49e-85 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1148 - - vra:106770428 2038.85