Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1143 ATGGCTGCACCACTAGGCAATAGGCTCCAAAGCATGTTGCAGGCTGCGGTGCAATCTGTTCACTGGACTTATAGCCTCTTCTGGCAACTTTGCCCACAACAAGTGATTCTGGTTTGGGGTGATGGGTACTACAATGGGGCAATCAAGACTAGGAAGACGGTGCAACCAATGGAAGTGAGTGCTGAGGAGGCATCTCTCCAAAGAAGCCAGCAACTTAGAGAACTGTATGAATCACTGTCTGCCGGAGAGACAAATCCGCCAACTCGACGGCCTTGCGCCGCCTTGTCGCCAGAGGACTTAACAGAATCAGAATGGTTCTATTTGATGTGTGTCTCATTCTCCTTTCCTCCTGGTGTTGGGTTGCCTGGAAAGGCATATGCTAGGAGGCAGCATGTTTGGCTCACTGGTGCAAACGAGGTGGACAGCAAAACATTTTCACGAGCTATTCTAGCCAAGAGTGCTCGAATACAGACAGTGGTGTGCATTCCTTTATTGGACGGCGTTGTTGAGTTTGGTACAACGGATAAGGTTCAAGAAGACCTTAACTTCATCCACCACGTGAAGACATTCTTCGCAGAACACCACCACCCTCTGCCGCCCAAGCCCGCCCTGTCCGAGCACTCAACCTCCAACCCCATCTCCTCCTCCGACCACATCCCCGCCGTCATGTACACTGTCGCAGACGCACCCGCAGCCGATCCCGTCCTAAACGACGAGATGGACGAAGATGAAGAGGAGGAGGATGAGGAGGAGGAGGAAGAAGAAGAGGAGGAGGGGGCGGAGTCCGCCTCTGAGGACGAGACCCGAGATCGCATTGCTCGCCGGGTCACGACGCCGGAGATGGAGGACGTGACGAGGGCGGAGCCCAGCGAGCTGATGCAGCTGGAGTTGCCGGAGGATATCCGGGTGGGGTCTCCGAACGACGGGTCGAACAACTTAGACTCGGACTTCCACTTGCTGGCGGTGAGTCAAGGAGGGAACGCGGCGGGGCAGGCTGAGTCGAGCGTGAGGTGGGGCCCGAGTGAAGAGGCATTACAAGTTCAACTACCAGCTTCAGCCCCGCATCTATTAGAAGACTTGACCCAAGAGGACAATCACTACTCTGAAACCGTATCCAACATTCTCCAAAACCAGTCCAGCCGGTGGCCCACATCGCCGACCTCCGTTGGCTACATCACATACTCCACGCATTCAGCTTTCACAAAGTGGAGTAGCCGCGCCAGCCACCTCTTCCACCCGGCGGTCGACGGCCCCAGCCAGTGGCTCCTCAAGTACATTCTCTTCACCGTCCCCTACCTCCATGCCAAGAACCCCGCCGAAACCTCTCCCCAAACCGCCGCCGACCCCAAGCTGCGCGGCAAGGGAACGCCGCAGGACGAGCTGAGCGCCAACCACGTGCTCGCGGAGCGCCGCCGCCGCGAGAAGCTGAACGAGCGGTTCGTAATCCTGCGGTCACTGGTCCCCTTCGTCACCAAAATGGACAAGGCATCAATTCTGGGTGACACCATCGAGTATGTGAAGCAGCTGCGGCGGAAGATCCAGGAGCTTGAGGCGCGCAACCGGCACACTGAGGCGGAACACCGTTCGAAGCTCCCTGAGGTAACGGTTCAAAGGACGAGCAGCAATTCGAGCAAGGAGCAGCAGAGGAGTGGGGTGACGGTGATGGAGAAGAGGAAGGTGAGGATTGTGGAAGGGGTGGCGGCAAAGGCGACGGCGGTGGAGGCTGAGACGGCAACATCAGTGCAAGTTTCGATCATTGAGAGCGACGCACTGTTGGAGATCGAGTGCGTCCACAGAGAAGGGTTGCTTCTTGATGTGATGCAGATGCTGAGGGAGGTGAGGATAGAGGTTATTGGGGTGCAGTCAACACTTAGCAATGGGGTGTTCATGGCGGAGCTGAGGGCTAAGGTGAAGGAACATGCGAACGGAAAGAAGGTGAGCATTGTGGAAGTGAAGAAGGCACTTAACCAAATCATTCCCCATCCTCTCCACTGA 1995 0.5644 MAAPLGNRLQSMLQAAVQSVHWTYSLFWQLCPQQVILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCAALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHVWLTGANEVDSKTFSRAILAKSARIQTVVCIPLLDGVVEFGTTDKVQEDLNFIHHVKTFFAEHHHPLPPKPALSEHSTSNPISSSDHIPAVMYTVADAPAADPVLNDEMDEDEEEEDEEEEEEEEEEGAESASEDETRDRIARRVTTPEMEDVTRAEPSELMQLELPEDIRVGSPNDGSNNLDSDFHLLAVSQGGNAAGQAESSVRWGPSEEALQVQLPASAPHLLEDLTQEDNHYSETVSNILQNQSSRWPTSPTSVGYITYSTHSAFTKWSSRASHLFHPAVDGPSQWLLKYILFTVPYLHAKNPAETSPQTAADPKLRGKGTPQDELSANHVLAERRRREKLNERFVILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQELEARNRHTEAEHRSKLPEVTVQRTSSNSSKEQQRSGVTVMEKRKVRIVEGVAAKATAVEAETATSVQVSIIESDALLEIECVHREGLLLDVMQMLREVRIEVIGVQSTLSNGVFMAELRAKVKEHANGKKVSIVEVKKALNQIIPHPLH* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1143 664 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 460 509 IPR011598 GO:0046983
Vra8g1143 664 PANTHER TRANSCRIPTION FACTOR TT8 8 661 - -
Vra8g1143 664 Coils Coil 499 526 - -
Vra8g1143 664 MobiDBLite consensus disorder prediction 521 551 - -
Vra8g1143 664 MobiDBLite consensus disorder prediction 198 217 - -
Vra8g1143 664 MobiDBLite consensus disorder prediction 534 550 - -
Vra8g1143 664 Pfam Helix-loop-helix DNA-binding domain 463 510 IPR011598 GO:0046983
Vra8g1143 664 MobiDBLite consensus disorder prediction 439 458 - -
Vra8g1143 664 SMART finulus 466 515 IPR011598 GO:0046983
Vra8g1143 664 Gene3D - 461 532 IPR036638 GO:0046983
Vra8g1143 664 PANTHER TRANSCRIPTION FACTOR TT8 8 661 - -
Vra8g1143 664 MobiDBLite consensus disorder prediction 264 288 - -
Vra8g1143 664 Coils Coil 236 266 - -
Vra8g1143 664 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 191 IPR025610 -
Vra8g1143 664 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 462 529 IPR036638 GO:0046983
Vra8g1143 664 MobiDBLite consensus disorder prediction 235 263 - -
Vra8g1143 664 MobiDBLite consensus disorder prediction 231 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1143 Vra-Chr8 26399652 26410574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1143 302 661 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 36.986 1.22e-53 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra8g1143 bHLH-MYC_N 9.4e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1143 - - gmx:100786815 1052.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1143 8 26399652 26410574 Vra8g1143 8 26399652 26410574 ECH
Vra3g0555 3 6152380 6156254 Vra8g1143 8 26399652 26410574 PCT