Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1127 ATGAGGGAGGGGCTGAGATCGCGGGCGCGATTGGGGACGGTTTCTGGAGGCGCAGAAGTTGTTACAAAGAAAAAGGTTGTTGTGAAGAGCGAGGCTGTTGCTAAGGATGGTGAGGGTTTGGAGGTGCAGAACTCAACGATTGAGAAGAAGGTTGAAGTTGCACGTGATGTTAAAGAAGAATGTGGCTTTGATTTGAATGTGAGTGCAAGTGGAGAGGTTGACTTGGAAGAGAATGGGAGTGGTAAGGGTTGTTTTAGTGGTGGGGCTGATATTGTAGTAGCTGAGGTAGATAAGAAGGCAAAGAAGGAGCAAGGTTCAAATAATGAGGGACTGGTTGGGGGTCGAGTGTTGCGCTCACGGTCTAAGGGGGGGAAGGATAGAAGAGTGTATTACGGAGAGAATGAGGATGTTGTTTCTGAGAGTGATAGAGAATGTAGTGGGGTTGAGAGTGTGAAAGTTAAGACGGAATGTGAAGAAGCTGGTGACTTTTTGGGCGATAGTTATGAGAATGAAAAAGCTAAGGTGAAGAAGGCAGAGAATGGAACGGGGAATTTGAAACGGAAGCGTGGGCGGCCTCCCAAAATAAAGTTGGAAGTGGAAGATCAACCAGTTCATCAGTTGCCACGTAAGCGTGGAAGACCCCCTCTTGCCAGCAAACAAAACCATGTAGTGGTGCCTAATAGAAAAGAAAAGGCGGCCCTTCGAAAAGATAAAAAGGTTTTAACTATGAGGCATGATGCTAATGTGAATGCAATTGATGATGCAGATTCAAGGAAATCTGCTGGGGATGAGTTAGAAAAGAAGGAAGTCTCTCCTGTCAAGAAGTCTAAATTTACTAAGGCTCTGGAAACTGGCAACAATGTGGTGGCCTCACCAGTAAGATCAAATACTGGGAATGCACTTGTCACTGAGAAAAGTGGAAGAAATATAGTTAAGCAGTTAGTGAGGGATCAAATAAAGGAAATTCTCTCAGCTGCCGGCTGGACAGTTGACTATAGACCTAGAAATGGTAGAGAGTACCATGATGCAGTTTATGTTAGTCTGGACGGACACACACACTGGTCAATCACCTTGGCCTACAAAAGGCTTAAAGAGTATTATGAAGCTGGTAATGGTGAAGGTAAGGCATATGGGCCAGGCTTCAAATTTACACCAATAGCAGCAGAGGATTTCCAAATACTCACTAAGGTAATTAAAAAGCAAAGAAATGGGAAAGTTAAATCAGTAAAGAAAGGGGGAAAGGGTGGGAACAAAAACAAAGAAAGGTCAGGTTCTGGTGCAGCCGTGGGTAAGTCAGTGAAGAGGAAAATGAAAAGGAAACGGTCTCCTGGAGACATAGATTCTATATCACCGAACAGGATGCCAGTTCTTGTGAGGGACCATAAGCGACACAAAACACAAAATAAGCTGCGAAGTGGTCCATTGGTTCGTAATGCTAAGGAGATAGATTCAGAAACTGAGGGATATGTACTGTACAGTGGAAAAAGAACTTTGCTTGCCTGGATGATTGATTTGGGCACAGTCCTTCTAAATGGGAAGGTTCATTATAAGGCACCCGAAAATAAAAGTGCAGCACTGGAGGGTAAGATCACAGGAGATGGCATTCATTGTGGCTGCTGTGATAAAATCATTACAATTTCAGAATTTGAAGTTCATGCAGGAAGAAAATTTGCTGATCCCCTTCAAAATATATATGTGGAGGAAGGAAAGTCTCTTTTACAGTGTTTGCTAGATTCGTGGAATAAGCAAGATGAATCTGAACGTCATGGTTTTCATTTTGTTGATGTTGCGGGTGAGGATCCGAATGATGATACTTGTGGGGTCTGTGGAGATGGTGGAGACCTGATATGTTGTGATGGTTGCCCGTCAACATTCCATCAAGACTGCTTGGATATACAAAAGTTTCCATCTGGTGATTGGCACTGCATTTATTGCTGTTGCAAATTTTGTGGGTCAGTTAATGGATGTTCAGACCAAAAGGATAGTGATGATCTTACCGTGTCAAAGTTACTCACGTGCCGACTATGTGAGCAAAAATATCACAGATCCTGCATTGAGGCAAATGATTGCAATACTATTGATTACAGTGATGTGATCTTTTGTGGAAACAGATGTCAAGAGTTATCTGAGGGACTTGAAACGCTCCTGGGGGTTAGACATGAAATTGAAGATGGGTATTCCTGGACTTTTATTAGGCGGTCAGATGCTGGCATTGATGCTTCTCAGATAAAACCTCATATGGTTGAATGTAATTCTAAGCTCGCTGTTGCATTATCAATAATGGATGAGTGCTTCATGCCATATATTGATCATAGAAGTGGGGTCAACCTGATCCACAGTATTCTGTATAACCGTGGGTCAAATTTCAATCGTCTCAACTATAGTGGATTTGTTACTGCAATTCTAGAGAGAGGTGATGAGATGATTTGTGCTGCATCTATCAGGATCCATGGGAACCAACTAGCAGAGATGCCATTTATTGGAACCCGCTATATGTACAGGCGACAAGGAATGTGCCGTAGGCTTCTAAATGCCATTGAATTGGGACTGAGCTCTTTAAATGTTGAGTTATTAGTGATACCTGCTATCTCAGAGCTCAGAGAAACTTGGACTTCCGTTTTTGGGTTTGAGCCACTTGAATCAGCAATCAAGCAAACCGTACATAATACAAATCTATTGGTATTTCCTCATGTAGATATGTTACAGAAGAAGATATCAAAACATGAATTGGCTGGTCATAATCCAATTCCTTCAGAAGCTGTCAATCTTCGAACCAATCAAATAGCAAACAATTGCAATGGAGTGGGATCATCTGGATCTGATTTGGTCAATTATATTGAGATTCCTAGCTGCCTTAATACATGCCAAATAAAGGACGAAGCCACATCTATTGAATCTGATTGTCATCTTCCTGAGGGTTCATTGAATAATGTACCTGACATTGCTAGCAACATTAATGATTATAGGCAATCTACTAAAGATGACACACGTGATGTTGTTTGTAACAAAGGTGATGAGAATCCAGTGATGGACAACACTATGAAAAATGCCTGCGAATATGTGACTGATACTTGTGGTGTAGCTGGAGATAGCCAGTCGAACAATGGCACGATTCCTTACGAGCAAAGACTATGTCTCACATCTTGTATTAACACTGAGGCTACAGAAGGACAATGTGTTAGTGTTTCGTTGGAGGTTACTGAAAACTTACCTAATCATGTCGCAGTATCATATGAAGTTATGTCAAATAACAAAACTGCGGAAGACTCGGAACCCTGCGGTACAGAAAGTATTACAAGGGATTCAAAACTTTCTGCTGACTCTATTCACCAGGATTCATATATAGTTTCTGACAGTTGTGAACGGAGAAGTGACACTGATTGTGGTCAACCGAATTTTATAGGAACAGAAGAAAAACGTGGTGAATTTATTAGTGTTTGTGGTTCTCATGGTAGACCCAATGGTGATTGTGCCTCTGGTGAAGGTGCTGCCGCCACTAACGTGTTGTTGCACCTTCCATCACAGGACATGACCAATAACAAGCCTTGGGTGAAAGGGTCTTCTTCAGAGTTACATGAGCCTGATTTGCAGGTGGATCAAACTGAACAGAACAGTGCTCCCTCCCCATGGAGCCCTAACACCTGTGCATCTACTGGCAGTGCTTCTCGTGGTAGTACTGAGGGGATATTTTTGTCAAACCAAGCCAGTTGA 3711 0.4236 MREGLRSRARLGTVSGGAEVVTKKKVVVKSEAVAKDGEGLEVQNSTIEKKVEVARDVKEECGFDLNVSASGEVDLEENGSGKGCFSGGADIVVAEVDKKAKKEQGSNNEGLVGGRVLRSRSKGGKDRRVYYGENEDVVSESDRECSGVESVKVKTECEEAGDFLGDSYENEKAKVKKAENGTGNLKRKRGRPPKIKLEVEDQPVHQLPRKRGRPPLASKQNHVVVPNRKEKAALRKDKKVLTMRHDANVNAIDDADSRKSAGDELEKKEVSPVKKSKFTKALETGNNVVASPVRSNTGNALVTEKSGRNIVKQLVRDQIKEILSAAGWTVDYRPRNGREYHDAVYVSLDGHTHWSITLAYKRLKEYYEAGNGEGKAYGPGFKFTPIAAEDFQILTKVIKKQRNGKVKSVKKGGKGGNKNKERSGSGAAVGKSVKRKMKRKRSPGDIDSISPNRMPVLVRDHKRHKTQNKLRSGPLVRNAKEIDSETEGYVLYSGKRTLLAWMIDLGTVLLNGKVHYKAPENKSAALEGKITGDGIHCGCCDKIITISEFEVHAGRKFADPLQNIYVEEGKSLLQCLLDSWNKQDESERHGFHFVDVAGEDPNDDTCGVCGDGGDLICCDGCPSTFHQDCLDIQKFPSGDWHCIYCCCKFCGSVNGCSDQKDSDDLTVSKLLTCRLCEQKYHRSCIEANDCNTIDYSDVIFCGNRCQELSEGLETLLGVRHEIEDGYSWTFIRRSDAGIDASQIKPHMVECNSKLAVALSIMDECFMPYIDHRSGVNLIHSILYNRGSNFNRLNYSGFVTAILERGDEMICAASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLLNAIELGLSSLNVELLVIPAISELRETWTSVFGFEPLESAIKQTVHNTNLLVFPHVDMLQKKISKHELAGHNPIPSEAVNLRTNQIANNCNGVGSSGSDLVNYIEIPSCLNTCQIKDEATSIESDCHLPEGSLNNVPDIASNINDYRQSTKDDTRDVVCNKGDENPVMDNTMKNACEYVTDTCGVAGDSQSNNGTIPYEQRLCLTSCINTEATEGQCVSVSLEVTENLPNHVAVSYEVMSNNKTAEDSEPCGTESITRDSKLSADSIHQDSYIVSDSCERRSDTDCGQPNFIGTEEKRGEFISVCGSHGRPNGDCASGEGAAATNVLLHLPSQDMTNNKPWVKGSSSELHEPDLQVDQTEQNSAPSPWSPNTCASTGSASRGSTEGIFLSNQAS* 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1127 1236 MobiDBLite consensus disorder prediction 1198 1236 - -
Vra8g1127 1236 MobiDBLite consensus disorder prediction 1175 1236 - -
Vra8g1127 1236 SUPERFAMILY FYVE/PHD zinc finger 598 651 IPR011011 -
Vra8g1127 1236 SMART AT_hook_2 208 220 IPR017956 GO:0003677
Vra8g1127 1236 SMART AT_hook_2 186 198 IPR017956 GO:0003677
Vra8g1127 1236 MobiDBLite consensus disorder prediction 1085 1105 - -
Vra8g1127 1236 MobiDBLite consensus disorder prediction 102 125 - -
Vra8g1127 1236 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 41 1188 - -
Vra8g1127 1236 MobiDBLite consensus disorder prediction 193 208 - -
Vra8g1127 1236 MobiDBLite consensus disorder prediction 404 452 - -
Vra8g1127 1236 MobiDBLite consensus disorder prediction 174 217 - -
Vra8g1127 1236 Pfam Tify domain binding domain 528 577 IPR032308 -
Vra8g1127 1236 SMART PHD_3 647 706 IPR001965 -
Vra8g1127 1236 SMART PHD_3 605 646 IPR001965 -
Vra8g1127 1236 CDD PHD1_AIRE 606 645 - -
Vra8g1127 1236 ProSiteProfiles Zinc finger PHD-type profile. 603 648 IPR019787 -
Vra8g1127 1236 PANTHER PHD FINGER PROTEIN 12 41 1188 IPR042163 GO:0003714|GO:0045892
Vra8g1127 1236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 595 667 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1127 Vra-Chr8 26068913 26077296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1127 184 911 PHD Transcription Factor Family AT5G36670 42.237 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1127 - - gmx:100784172 1609.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1127 8 26068913 26077296 Vra8g1127 8 26068913 26077296 ECH