LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra8g1126	ATGCCAAACACAAGAAATCTGAGGCAGCTCAACCTCAACATGTGCTGCTCAAACTCAGCTACTCCTGACTCAGAAACTCCTCCATTGAGTCCTATTACTACTTGTTCACATCACCATACTCACTCTGCATCTCCTTCTTCCATTATGATAAAGAACTTTAACTCTATCTATGACCCTACCTTAACCTCTAACAACTCTTTCACCTCCACTTTCTTCTCCACCACCACCTTCTTAGAACCAGAACCTCAACCTCAACCTCAACCCGCCGACTTCGCCACCGCTTTCGCCTCCCAGAGGTTCTTTTTCTCCTCTCCCGGCCACTCAAACTCCCTCCTTCAATACACTAACAAACCTACTCAACACCACTCAGCGTCGCTCAGAGAAGATGCTGCTCATGTTGAGAACATGAAGATCACTAAGAAGGTCTTGTTCAAGGGCAGCGTGGCGGTGGCCACGTACTCGCCGGACCCTTACGTCGATTTCCGCCGCTCTATGCAGGAGATGGTGGAGGCGCGTCCGGAGCTGATGGACGTGAAGTCGAACTGGAATGTGTTGCACGAGCTTCTTCTCTGTTATCTTGCGCTCAACCCAAAGAACACCCACAAGTTCATTCTTGGTGCTTTTGCTGATCTCCTCGTTAGCCTCATGTCTTTCTAG	657	0.4916	MPNTRNLRQLNLNMCCSNSATPDSETPPLSPITTCSHHHTHSASPSSIMIKNFNSIYDPTLTSNNSFTSTFFSTTTFLEPEPQPQPQPADFATAFASQRFFFSSPGHSNSLLQYTNKPTQHHSASLREDAAHVENMKITKKVLFKGSVAVATYSPDPYVDFRRSMQEMVEARPELMDVKSNWNVLHELLLCYLALNPKNTHKFILGAFADLLVSLMSF*	219

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra8g1126	218	PANTHER	TRANSCRIPTION REPRESSOR OFP7-RELATED	8	217	IPR038933	GO:0045892
	Vra8g1126	218	PANTHER	TRANSCRIPTION REPRESSOR OFP12	8	217	-	-
	Vra8g1126	218	ProSiteProfiles	OVATE domain profile.	150	214	IPR006458	-
	Vra8g1126	218	Pfam	Transcriptional repressor, ovate	154	215	IPR006458	-
	Vra8g1126	218	TIGRFAM	A_thal_3678: uncharacterized plant-specific domain TIGR01568	148	216	IPR006458	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra8g1126	Vra-Chr8	26058000	26060210	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	OFP	Vra8g1126		Ovate	1.7e-24	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra8g1126	-		-	aprc:113871147	290.812

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra3g0119	3	1362085	1364645	Vra8g1126	8	26058000	26060210	PCT