Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1113 ATGGGTAGTGTAGATCACGAATATCCTCTGGAAGCTGAGAGCGTGCAGCAGCGGCAGCAGCAAGTAGAGCTTCCTCCACCTCAACCCTTTTTCAAGTCTCTAAAGATCTCCTTGAAGGAGACTTTCTTCCCAGATGACCCTTTCAGACAGTTCAAAAACAAGCCATCCTCTAAAAAGATCATGCTTGCTATTCAGTATTTCTTTCCCATCTTCCAATGGGCACCCAAATACACCTTTAACTTCTTCAAAGCTGACCTCATAGCTGGCATCACCATAGCTAGCTTGGCCATTCCTCAAGGCATCAGCTATGCCAAGCTCGCCAACCTCCCTCCTATCCTCGGACTATATTCAAGCTTTATACCACCTTTGATTTATGCCATGATGGGAAGCTCAAGAGATTTGGCGGTGGGGACGGTGGCGGTTGGATCGCTTCTGATGGGTTCCATGTTGAGTGATGTGGTTAATCCTACCCAAGACCCACGGCTTTACCTACACCTTGCCTTCACTGCTACATTATTTGCTGGAATTTTTCAGGCTGCTTTGGGTTTGTTTAGGTTGGGGTTGATAGTTGATTTTCTATCACATGCAACAATAGTAGGGTTCATGGGAGGAGCAGCTACAGTGGTTTGTCTGCAGCAACTAAAATCGATTCTGGGTCTTGTGCATTTCACCCATGGAGCTGATATCATATCAGTGATGCGCTCTGTTTTCACCCAAACTCATGAGTGGAAGTGGGAAAGTTCTGTGTTAGGATTTGTCTTCATCTTCTTCCTCCTTATCACTAGATACTTTAGCAAAAAACGACCAAGGTTTTTCTGGGTGTCAGCAATGGCGCCGTTAACATCGGTTATATTGGGAAGTCTGTTAGTTTATTTCACTCATGCTGAGAGGCACGGAGTTGAAGTGATAGGAGAATTGAAGAAGGGTTTAAATCCACCATCAGTATCAAAGCTGGTTTTTGTGTCACCTTATATGACCACAGCTGTGAAAACTGGCATTGTTGTTGGCATCATATCACTAGCAGAAGGAATAGCAGTGGGAAGAAGCTTTGCAATGTATAAAAATTACAATATTGATGGCAACAAAGAGATGATAGCTATGGGTACCATGAACATAGTTGGTTCTTTCACCTCTTGCTACATCACAACAGGGCCATTTTCACGCTCAGCCGTCAACTATAATGCTGGATGCAAGACAGCAGCTTCCAACATTATAATGTCAATAGCAGTGATGTTGACATTGCTATTCCTAACACCCTTGTTCCATTACACTCCCCTGGTGGTGCTGTCAGCCATTATTGTATCTGCAATGCTTGGACTCATAGATTATGAAGCAGCCATCCATCTCTGGAAGATTGATAAATTTGACTTTGTTGTGTGCATGAGTGCATACGTTGGCGTGGTCTTTGCCAGTGTTGAAATTGGCTTAGTCATAGCTGTTGCAATTTCTGTACTTCGAGTACTGCTTTTCATTGCAAGGCCAAGGACATTCGTTTTGGGAAACATTCCAAATTCTGGGATTTACAGAAATGTTGAGCAATATCCAAATGCAAAGCATGTTCCTGGAATCCTCATCCTAGAAATTGATGCACCGATCTACTTTGCCAATGCAGGCTATTTAAGAGAAAGGATCACAAGGTGGGTTGATGAAGAAGAAAGCAGAATCAAAGCTACTGGAGAGACAAGTTTGCAGTATGTTATAATGGATATGAGTGGTGTTGGAAACATTGATACAAGTGGAATAAGTATGCTTGAAGAGGTCAAGAAGATTACTGAGAGAAGAGAACTTCAACTTGTTTTGGTGAATCCTGGAAGCGAGGTGATGAAGAAACTGAACAAATCCAAATTCCAAAATCATTTAGGAGAGAGATGGATCTATTTAACTGTTGAAGAGGCCGTTGGAGCATGCAACTTCAATCTCCATGAAAGAACGAATCTGAAGAACGATGAATCAGAGGGTTGGAACAATGTTTGA 1974 0.4265 MGSVDHEYPLEAESVQQRQQQVELPPPQPFFKSLKISLKETFFPDDPFRQFKNKPSSKKIMLAIQYFFPIFQWAPKYTFNFFKADLIAGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSRDLAVGTVAVGSLLMGSMLSDVVNPTQDPRLYLHLAFTATLFAGIFQAALGLFRLGLIVDFLSHATIVGFMGGAATVVCLQQLKSILGLVHFTHGADIISVMRSVFTQTHEWKWESSVLGFVFIFFLLITRYFSKKRPRFFWVSAMAPLTSVILGSLLVYFTHAERHGVEVIGELKKGLNPPSVSKLVFVSPYMTTAVKTGIVVGIISLAEGIAVGRSFAMYKNYNIDGNKEMIAMGTMNIVGSFTSCYITTGPFSRSAVNYNAGCKTAASNIIMSIAVMLTLLFLTPLFHYTPLVVLSAIIVSAMLGLIDYEAAIHLWKIDKFDFVVCMSAYVGVVFASVEIGLVIAVAISVLRVLLFIARPRTFVLGNIPNSGIYRNVEQYPNAKHVPGILILEIDAPIYFANAGYLRERITRWVDEEESRIKATGETSLQYVIMDMSGVGNIDTSGISMLEEVKKITERRELQLVLVNPGSEVMKKLNKSKFQNHLGERWIYLTVEEAVGACNFNLHERTNLKNDESEGWNNV* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1113 657 Pfam Sulfate permease family 82 462 IPR011547 GO:0016021
Vra8g1113 657 ProSitePatterns SLC26A transporters signature. 111 132 IPR018045 GO:0008271|GO:0008272
Vra8g1113 657 PANTHER SULFATE TRANSPORTER 2 655 IPR001902 GO:0015301|GO:0016020|GO:0055085
Vra8g1113 657 TIGRFAM sulP: sulfate permease 69 632 IPR001902 GO:0015301|GO:0016020|GO:0055085
Vra8g1113 657 Gene3D STAS domain 493 639 IPR036513 -
Vra8g1113 657 Pfam STAS domain 514 632 IPR002645 -
Vra8g1113 657 ProSiteProfiles STAS domain profile. 513 636 IPR002645 -
Vra8g1113 657 SUPERFAMILY SpoIIaa-like 516 636 IPR036513 -
Vra8g1113 657 CDD STAS_SulP_like_sulfate_transporter 514 629 - -
Vra8g1113 657 PANTHER SLC26A/SULP TRANSPORTER-RELATED 2 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1113 Vra-Chr8 25827680 25833439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1113 17 657 Inorganic Solute Cotransporters AT4G02700 66.044 0.0 884
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1113 K17471 - gmx:100810196 1187.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1113 8 25827680 25833439 Vra8g1113 8 25827680 25833439 ECH
Vra3g0131 3 1470482 1477482 Vra8g1113 8 25827680 25833439 PCT