Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1111 ATGGAGCAGTATGAGGTTCTAGAACAGATTGGAAGAGGCTCCTTTGCTTCTGCTCTACTTGTCAGACACAGGCACGAAAACAAAAGGTATGTTCTTAAGAAGATCCGGCTTGCCCGCCAGACGGATAGAGTACGCAGATCTGCTCACCAGGAGATGGAGCTTATCTCTAAAGTTCGAAACCCATTTATCGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGTTTTGTATGTATCGTCATTGGTTATTGTGAGGGCGGAGATATGACTGAAGCTATTAAAAAGGCCAATGGCGTACATTTTCCTGAAGAGAGACTCTGTAAGTGGCTGGTTCAACTGCTGATGGCACTTGATTACTTGCATGCAAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTCGGCCTGGCTAAAATGTTGACATGCGATGATCTTGCATCCTCGGTTGTTGGCACTCCAAGTTATATGTGCCCTGAACTTCTTGCTGATATACCCTATGGCTCTAAATCAGATATCTGGTCTTTGGGATGCTGTGTGTATGAAATGGCTGCTCACAAACCAGCTTTCAAAGCTCTTGATATGCAAGCACTGATCAACAAAATAAACAAGTCATTAGTGGCTCCACTACCAACAGTGTATTCTGGTTCTTTTCGGGGGCTCGTGAAGAGTATGCTGCGGAAGAATCCAGAGCTTCGGCCCAGTGCGGCAGAGCTGCTAAATCATCCGCATCTTCAACCTTACATTCTTAAAATTCACTTGAAATTAAATAACCCTAGAAGAAGTACTTACCCATTCCAATGGTCTGATTCAAACTATATAAGGAGGACTCGGTTTGTAGAGACGGATTCTGTTTCTACTCTTTCTGGAAGAGGTAAAAGATTGTCATTCAGCAATGACAGGGCGTTGAATCCTAGTATTTCTGGAACTGAACTAGGTTCTGTGTGTTCTACTCAAAGAGGTCAAGGATTATCTACGTGTTCAAAAGAGAAACACTGTGAGCTGTCTGTTGGTTGTGTCCGTGAAGGATGCAATTCCAACAAGTCAAGAGACTCCAAGTCGTCCACTGTTGATAGGGTGCCAAGATTGAGAACAGCTAAAGAATATGCCACTCCCCGAAGGCAGACAATACCATCAAAGACATCCCTTACAGGTTTCAAGCGTGAGTTGCTTCCAGTATCTTCTACTCCTGGTGTTAAATTTACCCCACCATCTCGCAGAGCTTCCCTTCCACTCCCTTCCAAAACCATGTGCATGACCACCCCATATAGAGCTAATGTTGGTCTTCTTCGGGGCATGGTCTCTCCTGATGTTTCTGTCAATGCACCACGAATCGACAAGATTGCTGAATTCCCTCTAGCCTCTTGTCAGGATTCTCTCTTTCCTGTTCATGGAACTTCATCAACCTCGGCTCAGTGTTCTTCTGGTTCCCCAAAGAGTGCCGACTGCTTAATCACGAAAGACAAGTGCACAATCCAAGTTGTGGACAAAGTCAGTGTCCCATCAAGTGTACAATCCCCAAAGAGTGCTGCTCCAGTTTCACATGAATGCTCTGAGCATGCTGTTTCAAGCCACTTCTCTGCAGAGTCTTGCCAGCGCAGATTTGACCCCTCGTCTTATCAGCAACGTGCAGAGGCATTGGAGGGTTTGCTTGAGTTCTCAGCTCGGCTCCTACAGCAACAGAGGTTTGAAGAACTTGGGGTGTTGTTGAAGCCATTCGGTCCTGAGAAGGTTTCCCCAAGAGAGACAGCTATTTGGTTGGCTAAGAGCTTCAAAGAAACTGTTGCATGA 1830 0.4481 MEQYEVLEQIGRGSFASALLVRHRHENKRYVLKKIRLARQTDRVRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMTEAIKKANGVHFPEERLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTCDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVAPLPTVYSGSFRGLVKSMLRKNPELRPSAAELLNHPHLQPYILKIHLKLNNPRRSTYPFQWSDSNYIRRTRFVETDSVSTLSGRGKRLSFSNDRALNPSISGTELGSVCSTQRGQGLSTCSKEKHCELSVGCVREGCNSNKSRDSKSSTVDRVPRLRTAKEYATPRRQTIPSKTSLTGFKRELLPVSSTPGVKFTPPSRRASLPLPSKTMCMTTPYRANVGLLRGMVSPDVSVNAPRIDKIAEFPLASCQDSLFPVHGTSSTSAQCSSGSPKSADCLITKDKCTIQVVDKVSVPSSVQSPKSAAPVSHECSEHAVSSHFSAESCQRRFDPSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLAKSFKETVA* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1111 609 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1111 609 CDD STKc_Nek 3 258 - -
Vra8g1111 609 SUPERFAMILY Protein kinase-like (PK-like) 1 313 IPR011009 -
Vra8g1111 609 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vra8g1111 609 Gene3D Transferase(Phosphotransferase) domain 1 84 272 - -
Vra8g1111 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vra8g1111 609 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1111 609 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Vra8g1111 609 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 598 - -
Vra8g1111 609 PANTHER SERINE/THREONINE-KINASE NEK4 1 598 - -
Vra8g1111 609 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1111 Vra-Chr8 25774504 25780690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1111 10 289 MAP Kinase Kinase Kinase AT1G53570 29.000 8.31e-36 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vra8g1111 Pkinase 9.8e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1111 K08857 - gmx:100810347 1077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0132 3 1494263 1502269 Vra8g1111 8 25774504 25780690 PCT