Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1102 ATGAATTATATATATCCAGTGAAAGAAGAATGCTTGGAATCATCACTACCACCATCATCATCATCATATCAGTTAGGTAATGAGTATCCACCAAAGCCCATTGAGGGACTTCATGACGCTGGACCACCACCATTCCTCACAAAAACTTTTGATGTTGTTGATGACCCAGTTACCAACCACGTAATTTCTTGGAGCAGAGACGGCACAAGCTTTGTGGTCTGGGATCCGCATACCTTCTCTGCAATTCTCCTTCCCAGATACTTCAAGCACAGCAATTTCTCAAGCTTTGTCAGGCAACTAAACACTTACGGTTTTAGGAAAATTGATCCAGATAGATGGCAGTTTGCAAACGAAGGATTCATCAGAGGGCATAAGCATTTGTTAAAAAGCATAAGGAGAAGGAAGACACCTTCCCAACTAACACAAAGTCACAGTGTTGAAGTTGGACGTTTTGAATTAGACAAAGAGGTTGATCGTTTGAAGCACGACAAGATAGTGTTGATGATGGAGCTTATGAATCTAAGACAGCAGCAGCAGAAAGCCAGAATGTGCATTAAGGAGATGGAGCAAAGGTTACAAGTGACTGAATTCAAGCAGAAACATATGATGGCTTTCTTAGCTAGAGCAATAAAAAATCCTGCCTTCATACACCAACTCCAAAAGAAAGAGAAGAGAAAGGATCTTGAAGAAGCCTTGACTAAAAAGAGAAGACAAATTGAGCAAGGAGTTAGAGGTATTGGAGAATCAAGTAGTAGGGGTGAAGGAAGGAGCAGTGTTAAAGTTGAGGCCTTGGAATTTGCGGGGTGCGATTGTGATTTTGGAGTGTCAGAGTTAGAAAAGTTAGCTATGGAAATGCAGGGATGTGGAAAGGGTAGGATAGACCGGGAGGTAGAAGAACCTGAGGCACTAGAATCACAAGAGAGACTGGATAGAGTACTTGATGAAGAGTTTTGGGAAGAACTGATGTTCAGTGAGAAATTTGATGGTCGATTTGACATTCCAACTGCTGAAGATAACGATGAAGATGTTGTCAACATATTGGCCAATGAACTTGGTTGCTTGGATTCAAGTCATTAA 1077 0.4132 MNYIYPVKEECLESSLPPSSSSYQLGNEYPPKPIEGLHDAGPPPFLTKTFDVVDDPVTNHVISWSRDGTSFVVWDPHTFSAILLPRYFKHSNFSSFVRQLNTYGFRKIDPDRWQFANEGFIRGHKHLLKSIRRRKTPSQLTQSHSVEVGRFELDKEVDRLKHDKIVLMMELMNLRQQQQKARMCIKEMEQRLQVTEFKQKHMMAFLARAIKNPAFIHQLQKKEKRKDLEEALTKKRRQIEQGVRGIGESSSRGEGRSSVKVEALEFAGCDCDFGVSELEKLAMEMQGCGKGRIDREVEEPEALESQERLDRVLDEEFWEELMFSEKFDGRFDIPTAEDNDEDVVNILANELGCLDSSH* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1102 358 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 19 346 IPR027725 -
Vra8g1102 358 SUPERFAMILY "Winged helix" DNA-binding domain 41 134 IPR036390 -
Vra8g1102 358 Gene3D - 38 135 IPR036388 -
Vra8g1102 358 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra8g1102 358 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra8g1102 358 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra8g1102 358 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 19 346 - -
Vra8g1102 358 Coils Coil 218 241 - -
Vra8g1102 358 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra8g1102 358 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra8g1102 358 Coils Coil 171 191 - -
Vra8g1102 358 SMART hsfneu3 41 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1102 Vra-Chr8 25643796 25646217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1102 18 357 HSF AT3G22830 47.606 6.99e-110 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vra8g1102 HSF_DNA-bind 7.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1102 K09419 - gmx:100811945 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0136 3 1545282 1547862 Vra8g1102 8 25643796 25646217 PCT