Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1101 ATGTTCCCTTCAGTTATGTCCAATTCCAATTCCTTGTCTGAAGAGGCCACTGTCTCCTGTGGTACAAGAATCGGTGGACTCAATCACGTAGTCACAACAATCATTTCTCCACAACAGCCTCAAAAGATCAAGAAAAAGAGAAACCTCCCTGGAAACCCTGACCCGGATGCTGAAGTGATTGCTTTATCACCGAAGACTCTTCTAGCTACTAACAGATTTGTGTGTGAGATCTGCAACAAGGGTTTCCAAAGAGACCAGAACCTTCAGCTTCATAGGAGAGGGCATAACCTCCCATGGAAGCTGAAGCAAAGGAACAACAAAGAGGTGAAAAAGAAAGCCTACGTTTGCCCGGAACCTTCATGCGTTCACCACAACCCCTCAAGGGCTCTTGGGGACCTCACAGGAATTAAGAAACATTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATCTATGCCGTTCAGTCTGATTGGAAAGCTCACTCCAAAACCTGTGGTACTAGAGAATATAGATGTGATTGTGGAACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCACAGAGCATTCTGTGATGCATTGGCTGAAGAAAGTGCAAGACTGTCAGCAAACCAACTGGCCACAACCACCACAAACCCTTTGGTCCAATCCCTCTTCCTTTTTCCAACCCAACAACACAACAACAACATCAACACCACCAACTTCATCAATCCTTGGGACCCAAACCCTAACCCTAGCAACCTTCCAACCCTCCACAACACCATCAAATCTGAATCTCAAAACTTCCACACTCCAATCTTCACCACCAACAACAACAACATCTCTTCTCCTCCTTCATTGCTTCTTCATCATCCCCCCAAGACCATGATAACCTCACCCTACAGTGACCTCCACGTCCGCCCCTCCAACACTGCCACGTCAGCGCACCTCTCCGCCACTGCGCTGCTCCAGAAGGCTGCAACCTTTGGCGCCGCCGCTATCACGGGCCCCACTCACGTCACTCCGCTCAGCATGGCCGAGTTGGGAACCGGATCGACTCAGCTCGACTCGGTGCCACCCGAACGCTACATCAACATGAGGGGCCTCACTAATAGCGACGGTCTCACCAGGGACTTTCTTGGCCTCACCAATGGCGACGCGGTGAACGTTAGCATCGACGTCAAGGACATGCTACCGTTCACGGGAGGGAGCGTAGAGTACAACCATTACCACCACCAACCCTACGATCACCATCATAATCATAGCAACTCGCTTTTCAAGCCACAGCATGGGTTTGGATTCCTTGGGACAACCACTGGACCCAATTCCTGGGGAAATTGTGAGTGA 1344 0.4948 MFPSVMSNSNSLSEEATVSCGTRIGGLNHVVTTIISPQQPQKIKKKRNLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATTTTNPLVQSLFLFPTQQHNNNINTTNFINPWDPNPNPSNLPTLHNTIKSESQNFHTPIFTTNNNNISSPPSLLLHHPPKTMITSPYSDLHVRPSNTATSAHLSATALLQKAATFGAAAITGPTHVTPLSMAELGTGSTQLDSVPPERYINMRGLTNSDGLTRDFLGLTNGDAVNVSIDVKDMLPFTGGSVEYNHYHHQPYDHHHNHSNSLFKPQHGFGFLGTTTGPNSWGNCE* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1101 447 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Vra8g1101 447 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 418 - -
Vra8g1101 447 Gene3D Classic Zinc Finger 142 207 - -
Vra8g1101 447 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 418 - -
Vra8g1101 447 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Vra8g1101 447 Gene3D Classic Zinc Finger 52 121 - -
Vra8g1101 447 Pfam Zinc finger, C2H2 type 73 95 IPR013087 -
Vra8g1101 447 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Vra8g1101 447 SMART c2h2final6 149 169 IPR013087 -
Vra8g1101 447 SMART c2h2final6 114 144 IPR013087 -
Vra8g1101 447 SMART c2h2final6 73 95 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1101 Vra-Chr8 25612162 25616490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1101 17 416 IDZ Gene Family AT4G02670 50.588 5.68e-124 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra8g1101 zf-C2H2 0.0044 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1101 K25870 - gmx:100780056 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0137 3 1564428 1568600 Vra8g1101 8 25612162 25616490 PCT
Vra10g0552 10 11391941 11395473 Vra8g1101 8 25612162 25616490 PCT