Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1096 ATGAACTTCTACGCTTGGATGTTATTCGTTCCACTTTGGGTCACCTTTTCTTACACCATCTGCGCCTTCAGTATATGGAGCACCGATGGATGGTTGTTCAAAATGGGCCTCATTGATTACTCCGGTGGCTTTGTTATTCACCTTTCTTCTGGAATTGCTGGTTTCATCGCAGCATCTTGGGTAGGGCCAAGGACAGTGAAGGATAGAGAAAGGTTTCCTCCAAACAACATACTTCTGATGCTGGCTGGGGCTGGACTACTATGGATGGGGTGGACCGGATTCAACGGTGGAGATCCATACGCAGCCAGCATAGATGCATCTCTGGCCGTTCTTAACACCCATGTCTGCACGGCCATGAGTTTGTTGACTTGGCTTTTCCTTGATATCCTCTTCTTTGGAAAACCTTCAGTGATTGGTGCCACTCAAGGCATGATCACTGGTTTGGTTTGCATCACCCCTGCTGCTGGTGTGGTGCAAGGTTGGGCAGCAATGATAATGGGAATTATGTCAGGAAGCATCCCGTGGTACACAATGATGGTCCTCCACAAAGAGATTAGGGTCCTAAAACAGGTGGATGATACCATGGCAGTTTTCCACACTCATGCAGTGGCTGGTTGCTTAGGTGGTATTTTGGCTGGTTTGTTTGCTGACCCTGACCTTTGCCGTCTCTTCTATGGGGTAGAGGATTCGGTGCACTATACGGGCCTTGTTTATGGCATATTCAGAGGAAGGCCTAAGGCAGGGTTCAGGCAAATGGGGGTTCAGCTTCTTGGCATTCTGTTTGTAATACTTCTGAATGTCACTACAACCAGTATTGTGTGCTTTGTTGTTAAGACCATTGTTCCACTTAGGCTGCAGGAAGATGAGTTGGAAGTTGGAGATGATGCAGTCCATGGTGAGGTTGCATATGCATTGTGGGGTGATGGAGAGAGGCTTGAGACTGCCACTCAGCAGTTGAGTTTTGAGATTAATCATCAATGGCCAACTCTTGATTTAAAAACTTCCATTGATGCACAAATGGAGTGA 1026 0.4708 MNFYAWMLFVPLWVTFSYTICAFSIWSTDGWLFKMGLIDYSGGFVIHLSSGIAGFIAASWVGPRTVKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYAASIDASLAVLNTHVCTAMSLLTWLFLDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAMIMGIMSGSIPWYTMMVLHKEIRVLKQVDDTMAVFHTHAVAGCLGGILAGLFADPDLCRLFYGVEDSVHYTGLVYGIFRGRPKAGFRQMGVQLLGILFVILLNVTTTSIVCFVVKTIVPLRLQEDELEVGDDAVHGEVAYALWGDGERLETATQQLSFEINHQWPTLDLKTSIDAQME* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1096 341 PANTHER AMMONIUM TRANSPORTER MEP2 1 325 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vra8g1096 341 PANTHER AMMONIUM TRANSPORTER 4 MEMBER 1-RELATED 1 325 - -
Vra8g1096 341 Gene3D Ammonium transporter AmtB like domains 1 306 IPR029020 -
Vra8g1096 341 PRINTS Rhesus blood group protein signature 78 96 IPR002229 GO:0005887
Vra8g1096 341 PRINTS Rhesus blood group protein signature 109 131 IPR002229 GO:0005887
Vra8g1096 341 PRINTS Rhesus blood group protein signature 164 182 IPR002229 GO:0005887
Vra8g1096 341 Pfam Ammonium Transporter Family 1 303 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vra8g1096 341 SUPERFAMILY Ammonium transporter 1 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1096 Vra-Chr8 25434989 25448273 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1096 1 326 Inorganic Solute Cotransporters AT2G38290 57.362 2.06e-128 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1096 K03320 - gmx:112999382 606.29