Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1088 ATGTGTGAGAAACATCTGAAACCAGATCTTCTCCTCGGTCTCTCTGGTACTGCATGGAGGCTGAAGCATCGATTCCCTCAAATTCACTCCGGGCTCAGATTTCCAAATTTCCAAGTTCTCAGGAACGTGACCAAGAATTTTGCGCCCGAGAACGAGCTTGGCCGTGGTGGATTTGGAGTTGTTTATAAGGGAGAGTTGGATGATGGAACAAAAATTGCAGTGAAACGAATGGAAGTTGGTGTGATTAGTAGCAAGGCATTGGATGAATTCCAGGCTGAGATTGCGGTTCTATCAAAAGTCTGGCACCGACATCTGGTATGTCTTTTGGGTTATTCTATAGAAGGTAATGAAAGGATTCTGGTGTATGAATATATGCCACAAGGGGCTCTAAGTAAGCATCTTTTCCATTGGAAAAGCCTTGAACTGGAGCCACTCTCTTGGAAGAGGAGGCTCAATATTTGTTATCTTCAAATTTATTTGTTATCTTCAAATTTTATACTAATCCTGATTTCAATGTTCAAATATATTTCAGTGACAGGAAAAATCACTACAAAAGCGGATGTTTTCAGTTTTGGGGTCGTGCTAATGGAGCTATTGACTGGACTAATGGCACTTGACGAGGACAGACCTGAGGAAAGCCAATACTTAGCAGCATGGTTCTGGCATATCAAATCAGATAAGAAGAAGCTAATGGCTACTATCGAACTGCAACGCCCTTTCCCCCACTCGAATTTTACTTCCATCACCACACCCACTGAGAAGAGCCACCATGCCTCAACTCCCTGGAACCTATCCACATTAGCCATTGGACATTCTTCCATTTTCCCCAATTTCATTGTTAGGGATTTCAAATTGAAGTTTGCGTCAACAATAGCCTGGATTGTCTTCGTGTTCTCCAACAATGAATCGCTTCCTCTCGCAACGAGTTTAAGAAATCTCCAAGTTCAATTTGAAATCCCTAACTCCCAATTTCATATGTTCCACTATATGGCCATATCTGATACAAGGCAAAGGAAGATGTCGACTGTAGAAGACAGAAGAACGGGCAAGGCGCTGGCGTATCCTGAAGTTGTTTACTTAACCCATGCAACTGACCCACAAATTCGAGGAGAGGTTGATGATAAATATCAATACTCGATAGAGAACAAAGATAACTCTGTTCATGGGTGGATTGCAGAGGATGATTCAACACCAGTGGGTTTCTGGGTGATAACTCCTACTAATGTGTTCCACAATGCTGAGCCCGTTAAACAAGAACTCACTTCTCATGTTGGCTCAACTTCTCTTTCCATGTTTACCGACACTCATTATGCTGGCAAGGAGACAATCATTATATTTTATGAAGGGGAGACTTATAAAAAGGTGAACTCCAAGATGGACGTATAG 1386 0.4214 MCEKHLKPDLLLGLSGTAWRLKHRFPQIHSGLRFPNFQVLRNVTKNFAPENELGRGGFGVVYKGELDDGTKIAVKRMEVGVISSKALDEFQAEIAVLSKVWHRHLVCLLGYSIEGNERILVYEYMPQGALSKHLFHWKSLELEPLSWKRRLNICYLQIYLLSSNFILILISMFKYISVTGKITTKADVFSFGVVLMELLTGLMALDEDRPEESQYLAAWFWHIKSDKKKLMATIELQRPFPHSNFTSITTPTEKSHHASTPWNLSTLAIGHSSIFPNFIVRDFKLKFASTIAWIVFVFSNNESLPLATSLRNLQVQFEIPNSQFHMFHYMAISDTRQRKMSTVEDRRTGKALAYPEVVYLTHATDPQIRGEVDDKYQYSIENKDNSVHGWIAEDDSTPVGFWVITPTNVFHNAEPVKQELTSHVGSTSLSMFTDTHYAGKETIIIFYEGETYKKVNSKMDV* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1088 461 SUPERFAMILY Protein kinase-like (PK-like) 28 222 IPR011009 -
Vra8g1088 461 PANTHER OSJNBA0070M12.3 PROTEIN 36 154 - -
Vra8g1088 461 PANTHER OSJNBA0070M12.3 PROTEIN 177 257 - -
Vra8g1088 461 ProSiteProfiles Protein kinase domain profile. 47 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1088 461 PANTHER OSJNBA0070M12.3 PROTEIN 177 257 - -
Vra8g1088 461 PANTHER OSJNBA0070M12.3 PROTEIN 36 154 - -
Vra8g1088 461 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Vra8g1088 461 Gene3D Transferase(Phosphotransferase) domain 1 169 257 - -
Vra8g1088 461 Pfam Rhamnogalacturonate lyase family 308 372 IPR010325 -
Vra8g1088 461 Pfam Protein tyrosine and serine/threonine kinase 50 147 IPR001245 GO:0004672|GO:0006468
Vra8g1088 461 Gene3D Transferase(Phosphotransferase) domain 1 30 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1088 Vra-Chr8 25304912 25308851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1088 327 455 Polysaccharide Lyase AT2G22620 57.364 5.05e-44 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vra8g1088 Rhamnogal_lyase 5.2e-12 CL0103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1088 - - vra:111242282 934.48