Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1085 ATGTTACATGCATCATATAATGTTATCTCTCAGCCTGCATCACACCGGTTATCTCAACAGGGTGCCATAACAAAGACAATGACTGCCATTGAAGAGACGGCTGGAATGGATGTGTTATGCAGTGACAAGACAGACACATTAACTCTTAACAAGCTTTCAGTGGACAAGAATATTATTCAGGTTTTTGTTAAAAACTTTGACAGTGATATGGTTATACTTATGGCTGCAAGAGCATCAAGGCTAGAGAACCAGGATGCAATTGATGGTGCTATAGTTTCAATGTTAGCAGACCCAAAGGAGGCGAGAGCTGGAATAAAAGAAGTTCACTTCCTTCCATTCAATCCAACTCATAAAAGAACTGCACTAACATACCTTGATGCTGCTGGTAAGATGCACATGGTTAGCAAAGGAGCTCCAGAGCAGACCACATTCATCAACAAAAACGACTTTCGAAGAGAAGCTCATCAGGATGCATGGGCTACTGAGCACAGAACCTTACATGGCCTCCACTCTGCTGAGCCAAAAGGGTTTAGCGATAAGCACACCTTCAGAGAAATTAATACATTGGCAGAAGAGGCAAGGAGAAGAGCAGAGATACCAAGGCTGAGAGAGCTTCACACTCTGAAAGGTAGAGTGGAATCATTTTTTCTGATAGAAACACTTAAAACAACTAATCGCTTTGATCTTAAAGTAGTAGATGAGACTTTCAACACAAATGTCTTAATACTTCCATAA 735 0.4095 MLHASYNVISQPASHRLSQQGAITKTMTAIEETAGMDVLCSDKTDTLTLNKLSVDKNIIQVFVKNFDSDMVILMAARASRLENQDAIDGAIVSMLADPKEARAGIKEVHFLPFNPTHKRTALTYLDAAGKMHMVSKGAPEQTTFINKNDFRREAHQDAWATEHRTLHGLHSAEPKGFSDKHTFREINTLAEEARRRAEIPRLRELHTLKGRVESFFLIETLKTTNRFDLKVVDETFNTNVLILP* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1085 244 Gene3D - 37 51 IPR023214 -
Vra8g1085 244 Gene3D - 52 164 IPR023299 GO:0000166
Vra8g1085 244 Gene3D - 184 226 - -
Vra8g1085 244 PANTHER CALCIUM-TRANSPORTING ATPASE 13 141 - -
Vra8g1085 244 PANTHER CALCIUM-TRANSPORTING ATPASE 142 213 - -
Vra8g1085 244 PANTHER PLASMA MEMBRANE ATPASE 13 141 - -
Vra8g1085 244 PANTHER PLASMA MEMBRANE ATPASE 142 213 - -
Vra8g1085 244 Gene3D - 2 36 - -
Vra8g1085 244 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 46 141 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1085 Vra-Chr8 25245619 25247246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1085 140 221 Primary Pumps ATPases AT5G62670 47.561 2.30e-18 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1085 K01535 - vra:111242281 476.092