Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1082 ATGACGATGAAGAGGCTGGCGAGAGTGAAGAGGGATGCGATTGCAGCATGCATGACTTGCCCGCTTTGCAACAAGTTCCTCAAGGAGGCCACTGCCATTTCTCTTTGCCTTCATACGTTTTGCAGGAAGTGCATTTATGATAAAATTACAGATGAAGAATTGGAAAATTGTCCAGTATGCAACATTGATTTGGGCATTGTTCCGCTGGAGAAAATGAGGCCAGATAACAGTTTGCAAGATTTAAGGAACAAAATTTTCCCTTTCAATAAAAGAAAGCAGAAGGCACCTGTAGCCATCCCTTCAGTACTATTACCAGCTAGAAGAAAGGAAAGATCACTTTCATCTTTGGTTGTCAGCACTCCAAGGGTATCTACACAATCAACCATGACAGGAAGAAGAACAAAACCTACAAGAAAGGCACTAGGCCTGCAGGGCTCTGGTTTCTCTGTTGAAAAGCTCATTAAAAAAGAAGAGGAATTACTGGAAGATCGCCAAGATAGTTCATGCTCACCTGACACTTCAAACAAGTCTGCAAAGAGTGCGGGACAGAGTTTGTCACCTTGTAAAAATAGTCAATCCATATGCAATAGAGGACTGCAGAATGGTGCTGAAACACAGGAAGCAAAATGGGATCTTTGGAAAACTTTGAATTATTTAGCAGAGGCTGCAAGTAGGAGTAAGTCTTTCAAGTCTAATGTGCAATCGTCTAATGCTAAACCAGAATCCGTGAAAGTAAATGACAGCGATAATAAAGTGCTGAAATCCAAACTTGAGGAAAATAAGCGCAAGGCAAAAGTTGAAGATGAAAAGATTAGCACTGATCATGTCTCTCCAGATACAGCAAAACCCAACAAACTGCGAAGAGTTCGCCCAAAAAAGGAACCTGTTTTTGGAGAATCTAGAATATCCCCTCAGGCTGTTCTGGATGCTAATGACAGTAACCTTTTATGGAATGACTCAATTTGGTTCTCCTTAGCAGCTTCTGAAAACCAGGAAGGAGATGCACCTTTACCCCAAATTCCTTCAAGTTATGTAAGAATAAAGGACGGAAGCATACCTGTCTCATTTATCCAAAAGTTGTTAATGAAGAAACTGGGCCTGAAAAGTGAGGACGAGGTAGAGATCAAATGCATGGGACATCCTGTGCTTCCTTCACTACAGGTACAGAATTTAGTTGAATTGTGGCTTGATACGGCATCTACAGGCCACAGAATTCCTGCAACCATAGGATCCTCAGGGAAAGATTTTGTGATGATCCTAACCTATGGTCGGAAGGTCCAACAACCTTGA 1290 0.4178 MTMKRLARVKRDAIAACMTCPLCNKFLKEATAISLCLHTFCRKCIYDKITDEELENCPVCNIDLGIVPLEKMRPDNSLQDLRNKIFPFNKRKQKAPVAIPSVLLPARRKERSLSSLVVSTPRVSTQSTMTGRRTKPTRKALGLQGSGFSVEKLIKKEEELLEDRQDSSCSPDTSNKSAKSAGQSLSPCKNSQSICNRGLQNGAETQEAKWDLWKTLNYLAEAASRSKSFKSNVQSSNAKPESVKVNDSDNKVLKSKLEENKRKAKVEDEKISTDHVSPDTAKPNKLRRVRPKKEPVFGESRISPQAVLDANDSNLLWNDSIWFSLAASENQEGDAPLPQIPSSYVRIKDGSIPVSFIQKLLMKKLGLKSEDEVEIKCMGHPVLPSLQVQNLVELWLDTASTGHRIPATIGSSGKDFVMILTYGRKVQQP* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1082 429 SUPERFAMILY RING/U-box 15 85 - -
Vra8g1082 429 SMART ring_2 20 60 IPR001841 -
Vra8g1082 429 MobiDBLite consensus disorder prediction 227 295 - -
Vra8g1082 429 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Vra8g1082 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 101 IPR013083 -
Vra8g1082 429 MobiDBLite consensus disorder prediction 227 243 - -
Vra8g1082 429 MobiDBLite consensus disorder prediction 115 134 - -
Vra8g1082 429 MobiDBLite consensus disorder prediction 161 191 - -
Vra8g1082 429 MobiDBLite consensus disorder prediction 167 191 - -
Vra8g1082 429 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Vra8g1082 429 MobiDBLite consensus disorder prediction 244 295 - -
Vra8g1082 429 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Vra8g1082 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 4 425 - -
Vra8g1082 429 MobiDBLite consensus disorder prediction 115 142 - -
Vra8g1082 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 4 425 IPR044807 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1082 Vra-Chr8 25230117 25235403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1082 1 348 C3H Transcription Factor Family AT2G30580 48.433 5.40e-95 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1082 K16277 - gmx:100778462 750.355