Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1072 ATGGAAGCTGGCCTCATGAAGGAGAAGATGGTGTTTGAGGAAACTGAACTCAGGCTTGGACTTGGACTTGGACTACCTGGAAATGGAGCCATAGCAACTGAACCAGCAGCAGCAGCAGAAGGAGTTATTAGGAAGAGAGGCTTCTCTGAAACTGAGACTGAAACAACCACTGTTGATTTGAAGCTTAACCTCTCCCCAAAGGAACTTTCTTCTGCTGATGGAACAGATCCACGTAATAAGCCAAACGCTTCGCCTAAGGAGAAAACCCTTTTGCTTCCCGATCCCTCCAAACCTCCTGCTAAGGAGCAAGTTGTGGGATGGCCGCCAGTGAGGTCTTTCAGGAAGAACATGTTTGCAGCACAAAAGAACATGGGAGAGGAAAGTGAGAAGAACAGCCCTAATGCAAGCTTTGTGAAAGTTAGCATGGATGGAGCACCATATCTCCGGAAAGTGGACTTGAAGATGTACAAGAGTTACCCAGAACTCTCTGATGCCTTGGGAAAAATGTTTAGCTCCTTCACCATTGGGAATTGTGAATCCCAAGGCTTTAAGGATTTCATGAATGAGAGCAAGTTGATGGATCTTTTGAACAGCTCCGACTGTGTCCCAACCTATGAAGACAGGGATGGTGACTGGATGCTTGTCGGTGATGTTCCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTACGTATCATGAAAGGGAAGGAAGCCATTGGACTGGCACCAAGAGCCATGGAGAAATGCAAGAACAGGAGCTAG 762 0.4672 MEAGLMKEKMVFEETELRLGLGLGLPGNGAIATEPAAAAEGVIRKRGFSETETETTTVDLKLNLSPKELSSADGTDPRNKPNASPKEKTLLLPDPSKPPAKEQVVGWPPVRSFRKNMFAAQKNMGEESEKNSPNASFVKVSMDGAPYLRKVDLKMYKSYPELSDALGKMFSSFTIGNCESQGFKDFMNESKLMDLLNSSDCVPTYEDRDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAMEKCKNRS* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1072 253 SUPERFAMILY CAD & PB1 domains 129 234 - -
Vra8g1072 253 Gene3D - 129 247 - -
Vra8g1072 253 MobiDBLite consensus disorder prediction 63 104 - -
Vra8g1072 253 ProSiteProfiles PB1 domain profile. 135 235 IPR000270 GO:0005515
Vra8g1072 253 Pfam AUX/IAA family 15 244 IPR033389 -
Vra8g1072 253 MobiDBLite consensus disorder prediction 63 78 - -
Vra8g1072 253 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 246 IPR003311 GO:0005634|GO:0006355
Vra8g1072 253 PANTHER AUXIN-INDUCED PROTEIN AUX28 7 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1072 Vra-Chr8 25049822 25052149 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1072 127 238 B3 DNA Binding Superfamily AT3G61830 33.929 5.13e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vra8g1072 AUX_IAA 2.1e-80 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1072 K14484 - gmx:100780214 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1072 8 25049822 25052149 Vra8g1072 8 25049822 25052149 ECH