Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1071 ATGAAGGACATCCACGTGGGACCCCTATCATTATCACATGTACCAACGCCTCGTGATCCAACGCTCCAGGATTCGCTCCTCACATCCCATTGTCCCAATCAATCCAGCCCCACCGTGGTCCCCGCTGTAGAGTACCACTGGCCCTCCCTTGTTCCCCCCTTGTCCCCCTCTCACCCTCACACACCTGCTTTCATGTCCCTCCTGTCACCGCCAATCATATCTCTTCTTTCCAACCCCACCTCACGCGCTCCTTCAACCGTGTGCTCTGGGCCCCACTCTCCCCTACTCCCATTGGTCAGTAAGAAACGCGTGTCACAGCCCAGGGTGGCTTCTCTCTTCATCATTGTGTCAAAAATTCATGCACTCAGAATAAGTCACCTACATATTGTCCCACACCAATGTTGCTATAAAATTAATGATCTACTACCCACTACCCTTGCAACACAACTTGCATCTCATTTCTCTCCTCTCTCTCTCTCTCTTTCTCAAAAAACCGAGTTGAATTGTTCTGGTCTTTTTGTAAGCACCTATCAAGAAACAATGGAGAATTCATTGGGAAGCTACGAAAAACAGCTTAATCTGAAGGCCACTGAGCTGAGATTGGGGTTGCCCGGTAGCGATGAGCCTGAGAAACGTGCTACTGCTAGAAGCAACAAGAGATCTTCGCCGGAAGCAAGTGACGAAGAGAGCATAAGCAATGGTTCTGATGTCACAAAAGAAGACAACGTTGTACCACCTGCAAAGGCACAAGTAGTGGGGTGGCCACCGATTCGATCTTACAGGAAGAATAACGTACAGCAGAAGAAAGAAGAAGAAAGTGAAGGAAATGGGATGTACGTGAAAGTTAGCATGGCGGGTGCACCTTATTTGAGGAAGATAGATCTCAAGGTTTACAAAAGCTACCCTGAACTTCTCAAGGCCTTGGAAAATATGTTCAAGTGCATATTCGGAGAATATTCAGAAAGGGAAGGGTACAATGGATCTGAATATGCTCCAACTTATGAAGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGCACATGTTCGTGTCATCCTGCAAGCGGCTCAGAATTATGAAGGGATCAGAAGCAAAGGGGTTGGGTTGTTTTTGA 1122 0.4742 MKDIHVGPLSLSHVPTPRDPTLQDSLLTSHCPNQSSPTVVPAVEYHWPSLVPPLSPSHPHTPAFMSLLSPPIISLLSNPTSRAPSTVCSGPHSPLLPLVSKKRVSQPRVASLFIIVSKIHALRISHLHIVPHQCCYKINDLLPTTLATQLASHFSPLSLSLSQKTELNCSGLFVSTYQETMENSLGSYEKQLNLKATELRLGLPGSDEPEKRATARSNKRSSPEASDEESISNGSDVTKEDNVVPPAKAQVVGWPPIRSYRKNNVQQKKEEESEGNGMYVKVSMAGAPYLRKIDLKVYKSYPELLKALENMFKCIFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWHMFVSSCKRLRIMKGSEAKGLGCF* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1071 373 Gene3D - 271 373 - -
Vra8g1071 373 MobiDBLite consensus disorder prediction 200 245 - -
Vra8g1071 373 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 185 371 IPR003311 GO:0005634|GO:0006355
Vra8g1071 373 PANTHER AUXIN-INDUCED PROTEIN 185 371 - -
Vra8g1071 373 SUPERFAMILY CAD & PB1 domains 272 363 - -
Vra8g1071 373 MobiDBLite consensus disorder prediction 1 22 - -
Vra8g1071 373 ProSiteProfiles PB1 domain profile. 277 364 IPR000270 GO:0005515
Vra8g1071 373 Pfam AUX/IAA family 232 371 IPR033389 -
Vra8g1071 373 MobiDBLite consensus disorder prediction 204 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1071 Vra-Chr8 24985013 24986638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1071 268 370 B3 DNA Binding Superfamily AT2G46530 36.893 1.73e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vra8g1071 AUX_IAA 6.2e-59 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1071 K14484 - gmx:100780752 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0151 3 1715850 1717186 Vra8g1071 8 24985013 24986638 PCT