Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1069 ATGGCCAATCACCCTTCCGAACCTCCCACCGACGACTTCCTCGAGCAAATCCTCGGCCTCCCCACCTTCGCCTCCGCCGACCACGCCGACGCTTCTCCGATGATGCTCCAGCTCAACTCCGGGGACGCCGCCTTCCACGCGCCGCCATACCAGCTCGGCCTCAGCTTGGAACAAGGTAAGGGAGGCTTCCTCTCGCCTGAAGATGCTTCTGGAAGCGGCAACCGCTTCCGCGACGACGTCGTTGATACCAGGCCTAAGAACGTTTTTCATGGGCAACCCATGCCAACTACTGTTCCGACTGCCCCTCATCCACCAGCAGTGCGACCTAGAGTGCGCGCTAGAAGAGGACAGGCTACAGATCCACACAGTATAGCTGAAAGGTTGCGCAGAGAGAGAATAGCTGAAAGAATCAGGGCTTTGCAAGAACTGTTTCCTAGTGTCAACAAGACAGATAGAGCTGCCATGCTGGACGAAATTGTGGATTATGTCAAGTTCTTAAGGCTTCAAGTAAAGGTTTTGAGCATGAGTAGATTGGGCGGAGCTGGTGCTGTAGCACCACTAGTGACCGATATCCCATTATCATCGGTGGAGGAAGAAGGCGGTGAAGGAAGAAACCAGCCTGCTTGGGAGAAGTGGTCAAATGATGGCACAGAAAGACAGGTAGCTAAGCTTATGGAAGAAAATGTTGGGGCTGCCATGCAGTTTCTTCAATCAAAAGCACTCTGCATAATGCCTATCTCACTGGCATCAGCAATATACCCATCACAACCATCTGATCCTTCTAGTATAGTTAAACCTGAAACTAATCCTCCTTCTTAG 819 0.5189 MANHPSEPPTDDFLEQILGLPTFASADHADASPMMLQLNSGDAAFHAPPYQLGLSLEQGKGGFLSPEDASGSGNRFRDDVVDTRPKNVFHGQPMPTTVPTAPHPPAVRPRVRARRGQATDPHSIAERLRRERIAERIRALQELFPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGGEGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYPSQPSDPSSIVKPETNPPS* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1069 272 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 7 261 - -
Vra8g1069 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 115 176 IPR036638 GO:0046983
Vra8g1069 272 Gene3D - 110 167 IPR036638 GO:0046983
Vra8g1069 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 117 166 IPR011598 GO:0046983
Vra8g1069 272 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 261 - -
Vra8g1069 272 Pfam Helix-loop-helix DNA-binding domain 122 166 IPR011598 GO:0046983
Vra8g1069 272 SMART finulus 123 172 IPR011598 GO:0046983
Vra8g1069 272 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1069 Vra-Chr8 24955610 24960359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1069 45 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 80.000 2.07e-115 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra8g1069 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1069 - - gmx:100793177 449.514