Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1064 ATGTTGGTGGATGTGTGGGATGTTGCTTTTTTAGTATTCTGGTGTAGTTGGGTTAGTTCTGCCCCTTGTTTGGGTTCTTTAGTTTTTATTTTGCCCCTTTTTGTCTGTTTATTTTTATTTTTTATAGAGGCTAATATGGAAGAGGTTGAGCAAGCTAATAGAGCAGCTGTTGAAAGCTGTCATAAGGTTCTGAGTTTGTTGTCTCAACCAAGGGATCAGGTTCAGCATAGGAATTTAGTGGTGGAAACTGGAGATGCTGTAGTAAAGTTCAAGAAGGTTGTGTCCTTGCTTCAGAGTGGTTTGGGTCATGCAAGAGTGAGGAAGGTTAAAAACCCTCAAGTTCCCTTTACCCACCAAAGTATCTTCTTAGACAACCCAAATTGCAAAACCAACAACCATCACTCAAAAAATCTGCAGCTTTTCCAACCCAGCTTTCCTGACAATTCAATTGTGGAACTGGGTTCAACCATTAAACATTCACTCTCTCTAGGACAGCCCTCTTTGGAATTGAGCTCCAGTGGGAAAAGTGCTCTTCACCTCACTCAGCAGGCTTCATCAACTCACTATCACTTCTTTCAGCAACAGCAACAGCAAAGGGTGTTGCTCCAGCAGCAACAGCAACAACAACAGCAGCAACATTTGAAGCATCAAGCAGAAATGATGTTCCGAAGGAGCAATAGTGGCATAAACCTGAATTTTGACAGCACTAGCTGCACACCAACATTGTCATCTAATAGGTCTTTTATTTCTTCCTTGAGCATAGACGGAAGTGTGGCTAACTTGGATGGAAGTGCCTTCCATTTAATAGGAGCTCCACACTCTTCTGATCAGAATTCGCAACAGCACAAGAGAAAATGTTCTGCAAGAGGCGATGAAGGAAGCTTGAAATGTGGGAGTAGTTCTAGATGTCATTGCTCTAAGAAGAGGAAACATAGAATGAAAAGGTCAATCAAGGTGCCTGCTATCAGCAACAAACTTGCAGATATTCCCCCTGATGATTATTCATGGAGAAAGTATGGCCAAAAGCCCATCAAGGGCTCCCCTCACCCTAGGGGATACTATAAATGCAGCAGCATGAGAGGGTGTCCTGCTAGAAAGCATGTTGAGAGATGCTTGGAAGAGCCGACCATGCTAATTGTCACCTATGAAGGCGAACATAACCACCCTAAGTTACCAACGCAATCTACGAATGCATGA 1197 0.4302 MLVDVWDVAFLVFWCSWVSSAPCLGSLVFILPLFVCLFLFFIEANMEEVEQANRAAVESCHKVLSLLSQPRDQVQHRNLVVETGDAVVKFKKVVSLLQSGLGHARVRKVKNPQVPFTHQSIFLDNPNCKTNNHHSKNLQLFQPSFPDNSIVELGSTIKHSLSLGQPSLELSSSGKSALHLTQQASSTHYHFFQQQQQQRVLLQQQQQQQQQQHLKHQAEMMFRRSNSGINLNFDSTSCTPTLSSNRSFISSLSIDGSVANLDGSAFHLIGAPHSSDQNSQQHKRKCSARGDEGSLKCGSSSRCHCSKKRKHRMKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPKLPTQSTNA* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1064 398 Pfam Plant zinc cluster domain 283 328 IPR018872 -
Vra8g1064 398 Coils Coil 192 212 - -
Vra8g1064 398 MobiDBLite consensus disorder prediction 271 300 - -
Vra8g1064 398 Gene3D WRKY domain 312 392 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra8g1064 398 ProSiteProfiles WRKY domain profile. 325 391 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra8g1064 398 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 47 397 - -
Vra8g1064 398 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 47 397 IPR044810 GO:0003700
Vra8g1064 398 Pfam WRKY DNA -binding domain 332 389 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra8g1064 398 SUPERFAMILY WRKY DNA-binding domain 328 390 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra8g1064 398 SMART WRKY_cls 330 390 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1064 Vra-Chr8 24882850 24885504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1064 46 395 WRKY Transcription Factor Family AT2G30590 56.919 8.33e-122 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra8g1064 WRKY 5.9e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1064 - - vra:106772595 746.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1064 8 24882850 24885504 Vra8g1064 8 24882850 24885504 ECH