Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1061 ATGGCAACGGAAGAACCGACTGTCGTTGTGGAACCCGCACCCGAGCCTGCTGCCACCGAGTCTCCGCCGGAGGAGAAGGAGGAGCCTAAATCTGAAGCCAAGGCTAAGAAGACCAAGGAACCCAAACCTAAGAAGGTTTCTAGGCCACGTAATCCTCCAACTCATCCTTCATACGAAGAGATGATCAAAGACGCAATTACCTCCTTGAAGGAGAAAACTGGTTCCAGTCAATATGCCATTGCGAAGTTCGTTGAGGAGAAGCACAAACAGCTTCCCTCAAACTTCAGGAAGCTTCTTCTATACCACTTGAAGAAGCTTGTTGCTGCTGGAAAGCTGGTCAAAGTCAAAGGCTCCTTCAAGCTTCCACCTACCAGGCCTGCCCCTTCTTCCCCTGCCAAGAAGAAGCCAGCAGCTGCTAAGCCCAAGCCTAAGCCCAAGCCCAAGCCTGCTGCCAAGGCCAAAGATGCCAAGACTGCTAAGTCAAAGGCACCTGCTAAGGCAAAACCTGCTGCCAAGCCTAAGGCCAAGGCTCCAGCCAAGTCCAAACCTGCCGCAAAGCCCAAGGCTGCTCCCAAGCCTAAGGCTGCAGCTGCCAAGCCGAAGGCCACTAAGCCAGCCGCTAAGCCCAAGCCAGCTGCAGCCAAGCCCAAAGCTGCTAAGCCTGTTGCAAAGCCCAAGGCTAAGCCTGTGAAGGCTGCCAGGACTTCTACTAGGACTTCACCAGGGAAGAAAGCCCCTGCAGCTAAGCCCGCGCCGAAGAAAGTGGCGGCAGCTGCGAAGAAAACTCCAGTGAAGAGTGTGAAGCCCAAGAGTGTAAAGTCTCCGGCGAAAAAGGCTGCTACCAAAAGAGGGGGAAGGAAGTGA 864 0.5428 MATEEPTVVVEPAPEPAATESPPEEKEEPKSEAKAKKTKEPKPKKVSRPRNPPTHPSYEEMIKDAITSLKEKTGSSQYAIAKFVEEKHKQLPSNFRKLLLYHLKKLVAAGKLVKVKGSFKLPPTRPAPSSPAKKKPAAAKPKPKPKPKPAAKAKDAKTAKSKAPAKAKPAAKPKAKAPAKSKPAAKPKAAPKPKAAAAKPKATKPAAKPKPAAAKPKAAKPVAKPKAKPVKAARTSTRTSPGKKAPAAKPAPKKVAAAAKKTPVKSVKPKSVKSPAKKAATKRGGRK* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1061 287 PANTHER HISTONE H1 2 287 - -
Vra8g1061 287 Pfam linker histone H1 and H5 family 55 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra8g1061 287 PRINTS Histone H5 signature 41 62 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vra8g1061 287 PRINTS Histone H5 signature 68 85 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vra8g1061 287 PRINTS Histone H5 signature 110 134 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vra8g1061 287 PRINTS Histone H5 signature 147 161 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vra8g1061 287 PRINTS Histone H5 signature 182 199 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vra8g1061 287 PRINTS Histone H5 signature 204 223 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vra8g1061 287 PANTHER HISTONE H1.1 2 287 - -
Vra8g1061 287 SMART h15plus2 52 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra8g1061 287 MobiDBLite consensus disorder prediction 148 162 - -
Vra8g1061 287 MobiDBLite consensus disorder prediction 1 60 - -
Vra8g1061 287 MobiDBLite consensus disorder prediction 20 39 - -
Vra8g1061 287 MobiDBLite consensus disorder prediction 271 287 - -
Vra8g1061 287 MobiDBLite consensus disorder prediction 167 181 - -
Vra8g1061 287 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 54 123 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra8g1061 287 MobiDBLite consensus disorder prediction 112 287 - -
Vra8g1061 287 Gene3D - 50 127 IPR036388 -
Vra8g1061 287 SUPERFAMILY "Winged helix" DNA-binding domain 51 135 IPR036390 -
Vra8g1061 287 CDD H15 52 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1061 Vra-Chr8 24741823 24743029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1061 56 123 Single Myb Histone (SMH) Gene Family AT1G72740 35.294 4.29e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1061 K11275 - gmx:100795994 166.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1061 8 24741823 24743029 Vra8g1061 8 24741823 24743029 ECH