Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1059 ATGACAGACATATTTGAAAACCAACCATCACCTGATTCTTCAAATTATGCATCAAGCAGTGGCTTCTCTGTGGACGACAAGGAGATTGGATCAAAACATATATATCTTTTGGCCAACAAATCTGCTATTCACTTCTTTTCCATCAAAATTGACCTGAATTATGCTCGCATGGTAATGGCAGAGTTGGTGGGTACTTTTATTTTGATGTTCTGTATATGTGGAATCAGTGGAAGCACAGAATTCCAAAAGGGTGCAGTGGGCCTTGCGGAGTATGCAGCTACAGCAGGGTTAACAGTGGTGGTGATAATTTTCTCTATAGGGCCAATATCTTGTGCGCACGTTAACCCAGCTGTCACAATAGCCTTTGCCACAATGGGTCAATTTCCATGGTTGAAGGTTCCAGTTTACATAATAGCACAGACAGTAGGTTCTATGTCGGCAACATACATAGGTAGCCTTGTATACGGCATAAAATTAGATGCTATCATGACCATGCCACTCCAAGGGTGCATCTCTGCCTTCTGGGTGGAGCTTATTGCAACTTTCATCATCATGTTCCTCGTTGCAGCTTTGACATCTGAATCTCAATCAGTGGGCCATTTATCTGGCTTTGTTGCTGGTGTAGGAATTGGGCTTGGTGTGCTAATCACAGGACCAGTCTCAGGTGGATCAATGAATCCTGCAAGATCATTAGGTCCGGCAATTCTCTCATGGAAGTTTAAGAACATATGGATATACATGGTAGCCCCCAGTACTGGAGCTGTGGCAGGAGCTGCAATGTTTCGTTTCCTACGCATTCGAGACCAACATTCTACTACTTTGTTCTCCCCAAACATTAGTGACACTGGTCGTCCTATACCCTTTTGCTCAAGTTAG 876 0.4361 MTDIFENQPSPDSSNYASSSGFSVDDKEIGSKHIYLLANKSAIHFFSIKIDLNYARMVMAELVGTFILMFCICGISGSTEFQKGAVGLAEYAATAGLTVVVIIFSIGPISCAHVNPAVTIAFATMGQFPWLKVPVYIIAQTVGSMSATYIGSLVYGIKLDAIMTMPLQGCISAFWVELIATFIIMFLVAALTSESQSVGHLSGFVAGVGIGLGVLITGPVSGGSMNPARSLGPAILSWKFKNIWIYMVAPSTGAVAGAAMFRFLRIRDQHSTTLFSPNISDTGRPIPFCSS* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1059 291 ProSitePatterns MIP family signature. 113 121 IPR022357 -
Vra8g1059 291 Pfam Major intrinsic protein 54 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra8g1059 291 PANTHER AQUAPORIN NIP7-1-RELATED 9 287 - -
Vra8g1059 291 SUPERFAMILY Aquaporin-like 52 271 IPR023271 -
Vra8g1059 291 MobiDBLite consensus disorder prediction 1 21 - -
Vra8g1059 291 PANTHER AQUAPORIN NIP2-1 9 287 IPR034294 -
Vra8g1059 291 Gene3D Glycerol uptake facilitator protein. 31 274 IPR023271 -
Vra8g1059 291 PRINTS Major intrinsic protein family signature 56 75 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra8g1059 291 PRINTS Major intrinsic protein family signature 95 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra8g1059 291 PRINTS Major intrinsic protein family signature 132 151 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra8g1059 291 PRINTS Major intrinsic protein family signature 176 194 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra8g1059 291 PRINTS Major intrinsic protein family signature 207 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra8g1059 291 PRINTS Major intrinsic protein family signature 244 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1059 Vra-Chr8 24701804 24704206 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1059 51 286 Major Intrinsic Protein MIP AT4G10380 39.831 7.31e-54 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1059 K09874 - mtr:MTR_1g070385 430.639