Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1053 ATGATGGGGGAGAAGTTTTGTGTGAACGAAGAAGACAAGGGTGTGTTGGAGTCTGTGTTAGGTGCAGAGGCTGTTGCGTTTTTCATTTCAGCACTTTCCAATAATGTTTTTTCCAGCGTTGTTGCTCCTTCTGTCGGTGCTGACTCCACCCTCCGTCAGAGGTTGTGCCAGCTTGTTGAGGGTTCCAAGTGGAACTATGCAGTGTTCTGGCAAGTTGCTGGCTTGAAATCTGGTGGTTCTGCCTTGATTTGGGGTGACGGGCATTGCAGTGATCCCAAAGGGAAGAGGAGTTCAATGGGGAAAGACGATGAGCAGGAGGTTAGAAAGATGGTGCTGCAGAAGCTTGATGCCTGTTTTGGTGGGTGTGTGTCGAAAGAGGCTAATTATGCAAGACTGGATAGGTTGTCTGATTTGCTAATGTTTTACTTATCCTCAATGTGTTACATATTCGGTTTTGATTCGCCATGTGGTCCTGGGAGTTCATTCAAATCTGGTAAATTGATTTGGACATCTGATGTTGCCGGTTGTTTGAATCAATTAGAATCTAGATCATTTCTAGGGAAAGTGGCTGGTCTTCAAACTGTTGTTTTTGTTCCTCTGAAATCTGGGGTGGTGGAGCTTGGTTCGAATGAAGTGGTGTCTGAAGAACAGGGTTTTGTGGAGATGGTGAAGACAGCATTTGGGGAATCCAGTCCCGGGCAGACTAAGGTGTTTCCGAAGATTTTTGGGCACGAATTAAGCCTGGGGGATACAAAATCTCAGTCTATAACCATTAGTTTCTCCCCAAAGGTGGAAGATGATCCTGGTTTTACTTCTGACTCTTTTGAAGTTCAAGGACTGGGGTTGAACCATGCGTATGGAAATTCATCCAATGGAACTTTGGGGGACAGTAGTGAAGGGAAGATGTTCCCTCAATTGAATCAAATGATGGGTGGAAATTTTAATGCCCAAGCAAGGGTTCCTTGTCTAGATCTCGGTAATGAAGACACGTCCTCAATTCATGCAGATGAGAGGAAGCCCAGAAAAAGAGGTAGAAAACCTGCCAATGGGAGAGAGGAACCACTGAATCATGTTGAAGCAGAGAGACAGAGACGTGAGAAGCTTAACCAGAGGTTTTATGCCTTAAGAGCTGTTGTCCCCAATATATCTAAAATGGACAAGGCATCTTTGCTTGGTGATGCCATTACCTTCATCACTGATCTCCAGATGAAGATCAAAGTGTTGGAAGCTGAGAAGAACATGATTAACAACAAGGACCAGAGGTTATCCTTGCCAGATATGGATTTTCAGGAAAGAGAGGATGACACAGTTGTGACAGTGAGATGCCCTTTAGATACTCACCCTGTTTCTGATGTAGTTAAAACTTTCAGGGAGCATCAAATTGTGGCTCAAGACACCAATGTTTCTACTACAGATGATAAAATCATTCATACATTCTCCATAAGAACTGAGGGAGGGGAGGCTGCTGCCATACAGTTGAAAGAAAAGCTTGAAGCGGCCCTATCCAAAAATTGA 1515 0.4422 MMGEKFCVNEEDKGVLESVLGAEAVAFFISALSNNVFSSVVAPSVGADSTLRQRLCQLVEGSKWNYAVFWQVAGLKSGGSALIWGDGHCSDPKGKRSSMGKDDEQEVRKMVLQKLDACFGGCVSKEANYARLDRLSDLLMFYLSSMCYIFGFDSPCGPGSSFKSGKLIWTSDVAGCLNQLESRSFLGKVAGLQTVVFVPLKSGVVELGSNEVVSEEQGFVEMVKTAFGESSPGQTKVFPKIFGHELSLGDTKSQSITISFSPKVEDDPGFTSDSFEVQGLGLNHAYGNSSNGTLGDSSEGKMFPQLNQMMGGNFNAQARVPCLDLGNEDTSSIHADERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITFITDLQMKIKVLEAEKNMINNKDQRLSLPDMDFQEREDDTVVTVRCPLDTHPVSDVVKTFREHQIVAQDTNVSTTDDKIIHTFSIRTEGGEAAAIQLKEKLEAALSKN* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1053 504 PANTHER TRANSCRIPTION FACTOR BHLH3 2 503 - -
Vra8g1053 504 SMART finulus 358 407 IPR011598 GO:0046983
Vra8g1053 504 CDD ACT_UUR-ACR-like 436 503 - -
Vra8g1053 504 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 227 IPR025610 -
Vra8g1053 504 MobiDBLite consensus disorder prediction 330 358 - -
Vra8g1053 504 Coils Coil 398 418 - -
Vra8g1053 504 Pfam Helix-loop-helix DNA-binding domain 356 402 IPR011598 GO:0046983
Vra8g1053 504 CDD bHLH_AtAIB_like 349 426 - -
Vra8g1053 504 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 421 IPR036638 GO:0046983
Vra8g1053 504 Gene3D - 345 418 IPR036638 GO:0046983
Vra8g1053 504 PANTHER MYC 2 503 IPR045084 GO:0003700|GO:0006355
Vra8g1053 504 MobiDBLite consensus disorder prediction 326 358 - -
Vra8g1053 504 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 401 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1053 Vra-Chr8 24557976 24560226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1053 2 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 47.647 8.91e-155 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra8g1053 bHLH-MYC_N 3.4e-42 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1053 - - gmx:100782107 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1053 8 24557976 24560226 Vra8g1053 8 24557976 24560226 ECH