Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1052 ATGGGGGTTCCGGAAAATATTGTTGTTGGTTCTCATGTTTGGGTTGGAGATCCAGAAGTAATTTGGATTGGTGGCCAGGTACTGAGTATCAACGGAGAAGATGCTGAAATTCAGATTAGTGATGAGAGGAAGGTTGTTTCCCATTTGTCAAAATTATATCCAAAGGATATCGATGCACGTGCTGATGGAGTTGATGACATGACCAAGCTTGCTTATTTGCATGAGCCAGCAGTGCTACATAATTTGGAAACTAGATTTGCGATGAATGAAATATATACTTATACCGGAAATATTCTCATTGCAATCAATCCCTTCCAAAGTCTTTCACATCTCTATGATACTAATGTGATGCAAAGATACAAGGGATCAATGATTGGAGACTTGAGCCCACATGTTTTTGCTATTGCCGAAGGAGCTTATAGGGAAATGATGAATGAGGTGAAAAGCAATTCTATTCTTGTTAGTGGTGAGAGTGGTGCTGGTAAGACAGAAACCACCAAAATGCTTATGCAGTACCTGGCATATTTAGGTGGTCACACTGCATCAGAAGGCCGAACAGTTGAAAAACAAGTTCTAGAGTCAAATCCAGTTCTTGAAGCATTTGGTAATGCAAAAACTGTTAGAAACGACAATTCCAGCCGTTTTGGAAAATTTGTTGAGATCCAATTTGATAAGTTTGGACGAATATCTGGTGCAGCCATTAGAACTTATCTGCTTGAGAAATCTCGTGTTTGCCAAATCTCAGATCCTGAGCGTAACTATCACTGTTTTTACCTTATCTGCGCTTCTCCTCCGGAGGAAAAGGAGAAATATAAGTTGGGAGATCCTAAATCATTTCACTACCTTAACCAATCCAATTGCTACGAATTAGTTGGTGTTAATGCTGCTCAAGACTATCTTAGCACCAAGAGAGCCATGGATATTGTGGGAATCAGTCAGGACGAGCAGGATGCTATTTTCAGAGTTGTAGCTGCTATTCTTCATCTTGGAAATATTAACTTTTCAAAATCAGAAGAAACTGATTTCGCAGTTCTAGAAGAAGAAGAATCCAAGTTTCATCTACAAACAACAGCAGAACTTCTTATGTGTGATGCGCATGCTTTGGAAGATGCACTGTGTAAGCGTATGATGGTTACTCCAGAAGAAATCATCAAAAGAAGTCTTGACCCTCTGGGTGCCACAGTTAGCCGGGATGGTTTAGCCAAAACTATATATTCTCGTTTATTTGACTGGTTAGTTCAAAAAATTAATATCTCCATTGGGCAGGATCCTAGCTCAAAATGTCTCATTGGTGTTCTTGACATATATGGCTTTGAAAGCTTCCAAACAAATAGCTTTGAGCAGTTTTGTATAAATTTCACAAATGAAAAGCTGCAGCAACACTTCAACCAGCATGTGTTTAAGATGGAGCAGGAGGAATATACAAAAGAAGGGATTGACTGGAGCTACTTAGAATTTGTAGATAATCAAGATGTACTGGATCTCATTGAAAAGAAACCTGGTGGAATTATTGCTCTGCTTGATGAAGCTTGTATGTTTCCTAAGTCAACTCATGAAACATTTTCACAGAAGCTTTATCAGACATTCAAAGATCACAAACGCTTCATTAAGCCAAAATTGACACGTTCAGACTTCACTGTTAGTCATTATGCAGGAGATGTTCAGTATCAATCTGAGCACTTTTTAGACAAAAACAAAGACTATGTTGTTCCTGAACATCAAGAGATGCTAAGTTCTTCCAAATGTTCATTTGTATCAGGTCTTTTCCCTCCACTTTCTGAGGAGTCAGCCAAATCTTCTAAGTTTTCTTCCATTGGTTCTCGTTTCAAGCTACAATTACAACAGTTGATGGATACACTCAATCTGACAGAGCCACACTATATTAGATGTGTGAAGCCAAATACACAACTAAAACCTTTCATATTTGAACATATGAACGTCATCCAACAATTACGATCTGGTGGTGTTCTTGAAGCAGTAAGAATTAAATGTGCTGGATTTCCCACTCACTGGACCTTTCATGACTTTATAACTCGATTATGGATTCTTGCTCCGGAGATTCTTCGAGGGAACTTTGATGAAAAAGATTCGTGTAAAAAGATTTTGGAGAAGATTGGGCTGACAGGTTATCAGATAGGGGAAACAAAAATATTCTTAAGAGCTGGTCAGATGTCTGAATTGGATGCTCGAAGGGCGTTGCTGCTTGGTAGTTCAGCTACTGTTATTCAAAAGAATGCTAAAACTCGCTGTAGTCGGAAAACATATATTGATTTGCGAAAGTGCTCTGTTTTCCTTCAATCCATTTGCAGAGGAGAACTGGCTCGAAGATTGTATCATCACATGAAATATAGGCAAGTTGCTGCAGTCAGAATTCAAAAGCAGATGCGAAGAACACTAGCTAGGAAGCAGTATGTTGAAATAAAGTTCTGTGCAAATGTGTTGCAGACAGGTTTTCGAGCAATGGCTGCTTGTAATCAATTTAGATATAAAAAGCAAACATATAGAAAGCAGACTAGTGCATCAACAACTATTCAGTCCTATTGGCGTCGACATAAAGCTCTTGTTGACTATCAGAACCTTAAGAAAACATCAATCATTCAACAAAGCAGCAGCTCCTGTGATACACAGGAAGAGAAGGTTTCAGAGACTCCTCTGCAAAATGAAAGTCCTTCTATGGAAGAATCTTCATATCCTGTGCATGAAGAATCCTCAAATCCTGTGCAAGAAGACGAAAGTATTGAAGCTATCAGGGATTCTTCCAGTCCTCTCAAAGACACTGACAAGATTGAGGTTCTTGCTGTAGAAATAAAAAACTTAAAGGTCAAGTTGCATGCAGAAAAACAAAGAGGTGATGAATATGAAAGGAAATATGCAGAAGCTCAAGGATCCAATGAAGAGTTACGCAAAATATTAGCAGAAACTGAAAAAAGAGTACATCAGATTCAGGACACTTGGAACAGGATGATATCTTCCATGTCAAATCAAGTTGCCGCCGACCTGAAGACGATCTTGAGTACTTCATCAAGATTGAGTTCAAATTTTCGACCTATAGCTAGGGTTGACGTTGCTTCTAGTAACTCTGATACTTCGTCTACAGACTCTGATTTCACATTTCCAGCTACTGCACCAAATCCAGAACCTCAGGAGTCAAATTCTTTGCCGCTAGTAGTTCAGGATGTCACTGCAGGGGATGGATCGGGATCTGAAAGTGGAAAGGAGGGTTCATTTGATGATTTCTTCTAG 3243 0.391 MGVPENIVVGSHVWVGDPEVIWIGGQVLSINGEDAEIQISDERKVVSHLSKLYPKDIDARADGVDDMTKLAYLHEPAVLHNLETRFAMNEIYTYTGNILIAINPFQSLSHLYDTNVMQRYKGSMIGDLSPHVFAIAEGAYREMMNEVKSNSILVSGESGAGKTETTKMLMQYLAYLGGHTASEGRTVEKQVLESNPVLEAFGNAKTVRNDNSSRFGKFVEIQFDKFGRISGAAIRTYLLEKSRVCQISDPERNYHCFYLICASPPEEKEKYKLGDPKSFHYLNQSNCYELVGVNAAQDYLSTKRAMDIVGISQDEQDAIFRVVAAILHLGNINFSKSEETDFAVLEEEESKFHLQTTAELLMCDAHALEDALCKRMMVTPEEIIKRSLDPLGATVSRDGLAKTIYSRLFDWLVQKINISIGQDPSSKCLIGVLDIYGFESFQTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEGIDWSYLEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLYQTFKDHKRFIKPKLTRSDFTVSHYAGDVQYQSEHFLDKNKDYVVPEHQEMLSSSKCSFVSGLFPPLSEESAKSSKFSSIGSRFKLQLQQLMDTLNLTEPHYIRCVKPNTQLKPFIFEHMNVIQQLRSGGVLEAVRIKCAGFPTHWTFHDFITRLWILAPEILRGNFDEKDSCKKILEKIGLTGYQIGETKIFLRAGQMSELDARRALLLGSSATVIQKNAKTRCSRKTYIDLRKCSVFLQSICRGELARRLYHHMKYRQVAAVRIQKQMRRTLARKQYVEIKFCANVLQTGFRAMAACNQFRYKKQTYRKQTSASTTIQSYWRRHKALVDYQNLKKTSIIQQSSSSCDTQEEKVSETPLQNESPSMEESSYPVHEESSNPVQEDESIEAIRDSSSPLKDTDKIEVLAVEIKNLKVKLHAEKQRGDEYERKYAEAQGSNEELRKILAETEKRVHQIQDTWNRMISSMSNQVAADLKTILSTSSRLSSNFRPIARVDVASSNSDTSSTDSDFTFPATAPNPEPQESNSLPLVVQDVTAGDGSGSESGKEGSFDDFF* 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1052 1080 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra8g1052 1080 Gene3D - 667 733 - -
Vra8g1052 1080 MobiDBLite consensus disorder prediction 868 921 - -
Vra8g1052 1080 CDD MYSc_Myo11 76 720 IPR036018 -
Vra8g1052 1080 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Vra8g1052 1080 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Vra8g1052 1080 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra8g1052 1080 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra8g1052 1080 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra8g1052 1080 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra8g1052 1080 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra8g1052 1080 ProSiteProfiles IQ motif profile. 837 864 IPR000048 GO:0005515
Vra8g1052 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 783 IPR027417 -
Vra8g1052 1080 MobiDBLite consensus disorder prediction 1021 1057 - -
Vra8g1052 1080 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra8g1052 1080 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vra8g1052 1080 Gene3D - 252 310 - -
Vra8g1052 1080 Gene3D - 439 623 - -
Vra8g1052 1080 PANTHER MYOSIN MOTOR DOMAIN PROTEIN AND DIL DOMAIN PROTEIN 934 1021 - -
Vra8g1052 1080 PANTHER MYOSIN MOTOR DOMAIN PROTEIN AND DIL DOMAIN PROTEIN 6 908 - -
Vra8g1052 1080 PANTHER MYOSIN 934 1021 - -
Vra8g1052 1080 PANTHER MYOSIN 6 908 - -
Vra8g1052 1080 Pfam IQ calmodulin-binding motif 759 779 IPR000048 GO:0005515
Vra8g1052 1080 Pfam IQ calmodulin-binding motif 787 804 IPR000048 GO:0005515
Vra8g1052 1080 Pfam IQ calmodulin-binding motif 839 854 IPR000048 GO:0005515
Vra8g1052 1080 Gene3D Kinesin motor domain 65 662 IPR036961 -
Vra8g1052 1080 SMART iq_5 757 779 IPR000048 GO:0005515
Vra8g1052 1080 SMART iq_5 836 858 IPR000048 GO:0005515
Vra8g1052 1080 SMART iq_5 783 805 IPR000048 GO:0005515
Vra8g1052 1080 SMART iq_5 734 756 IPR000048 GO:0005515
Vra8g1052 1080 MobiDBLite consensus disorder prediction 1021 1080 - -
Vra8g1052 1080 MobiDBLite consensus disorder prediction 904 921 - -
Vra8g1052 1080 Coils Coil 929 984 - -
Vra8g1052 1080 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra8g1052 1080 Gene3D - 786 834 - -
Vra8g1052 1080 Gene3D - 735 785 - -
Vra8g1052 1080 MobiDBLite consensus disorder prediction 868 903 - -
Vra8g1052 1080 ProSiteProfiles IQ motif profile. 784 808 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1052 Vra-Chr8 24485786 24507345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1052 1 994 Myosins gene family AT1G54560 62.882 0.0 1375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1052 K10357 - gmx:100803485 1803.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1052 8 24485786 24507345 Vra3g0326 3 3830830 3849158 PCT