Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1050 ATGTTGATAAATGATCATGTTCATAAGCACGAAGCTGAAGAGATAATAGAGCCAGAAATAATTCCAATTAAAAAGTCCATGATGACTGGTTCAGGATCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGAAAATGCGTCAGAGGTTGTGTTTTTGCACCTTACTTTTGCCATGAACAAGGTGCTACTCATTTTGCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTCCTTGCTCACCTCCCTGTCACTGATCGTTGTGAAGCTGCTGTCACAATCTCATATGAAGCTCAAGCCAGACTTCAGGATCCTATTTATGGCTGTGTCTCCCATATTTTTGCACTCCAACAACAGGTGGTCAATTTACAAGCACAGCTGGCTTATCTCAAGGAACAAGCTGCCCAGAGTTGTCTCAACGCCTCTGTCACTGAAAACCCTAGTGAAAAATTATTTGAAAAATCTTCAGCTTCTATACCCCAAGATCTTCAAAGTTGGTTTCAGGTGGAAAATTCCAACCTGGGGCCAGAGTTTCTTCCTAACATGTGTACTAATTTTTCAACACAAAAACATTATGGGAATAATCTCATTGAAGATCTAAACCCTATCGGGATCAATTATGAAAATTCAGGTGCCATGGAAGAAAACAGCTCCTTTTCTAGCTTTGACGAGAGTTCCAATAGCTATTCCATGTCCTATGACATGCACACAAACAGGAGGACGTGGGGTTTTCATGAAGTTGAGGACCTACATTCAGTGGCTTTTGGGTACAGTACTCGAACACATTCATGA 795 0.4138 MLINDHVHKHEAEEIIEPEIIPIKKSMMTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVTDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQSCLNASVTENPSEKLFEKSSASIPQDLQSWFQVENSNLGPEFLPNMCTNFSTQKHYGNNLIEDLNPIGINYENSGAMEENSSFSSFDESSNSYSMSYDMHTNRRTWGFHEVEDLHSVAFGYSTRTHS* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1050 264 PANTHER LOB DOMAIN CONTAINING PROTEIN 28 259 - -
Vra8g1050 264 Pfam Lateral organ boundaries (LOB) domain 34 132 IPR004883 -
Vra8g1050 264 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 28 259 - -
Vra8g1050 264 ProSiteProfiles LOB domain profile. 33 135 IPR004883 -
Vra8g1050 264 Coils Coil 114 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1050 Vra-Chr8 24339079 24340444 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1050 34 168 AS2 family AT3G58190 72.263 4.83e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra8g1050 LOB 8.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1050 K13945 - gmx:100805623 412.149