Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1049 ATGGCTTCTTCAACAACTGCAAACGATGCTGCTTCTGCTTCTTCTTCTTCCTTTGGATCTCCCTGTGGGGCATGCAAGTTCCTGCGAAGAAAATGTGCCGCAGATTGCATCTTTGCACCCTACTTCTGCTCCGAACAAGGAGCTGCTAGATTCGCAACCATTCATAAGGTTTTTGGAGCTAGCAACGTTTCCAAGTTGCTCATGCGTATACCAGATAACGATCGTTTTGAGGCAATGGTCACAATCGCTTACGAAGCCCAAGCTCGCATCAGAGACCCTGTTTACGGTTGTGTCTCCCATATATTCGCCTTGCAACAACAGGTAGCAAGCTTGCAGGCACAGCTAGTGCAAATGAAGGCACTGCTAGATCAGAACCAGATGGTGTACAGAAACATGGAGAATCATTGGTCAGAGAATGTTGGACAAGCATTGAATCCGTTTCGTCCCACTTCCATGAATAACCCTATTTCTCCTCAGAGCTCACTTGACTCAATTGATTACAGCAGCAATATAAATGATGGAATGAGCCTGCAAGATGCACAAAACGGAGATGATTTTTGTTCTTGGAAAAGATCATATAGCAATGACTTGGGTGAGCTACAAGAATTGGCACTTAGAATAATGAGAAAGTGTGATTAG 639 0.4444 MASSTTANDAASASSSSFGSPCGACKFLRRKCAADCIFAPYFCSEQGAARFATIHKVFGASNVSKLLMRIPDNDRFEAMVTIAYEAQARIRDPVYGCVSHIFALQQQVASLQAQLVQMKALLDQNQMVYRNMENHWSENVGQALNPFRPTSMNNPISPQSSLDSIDYSSNINDGMSLQDAQNGDDFCSWKRSYSNDLGELQELALRIMRKCD* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1049 212 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 13 209 - -
Vra8g1049 212 PANTHER LOB DOMAIN CONTAINING PROTEIN 13 209 - -
Vra8g1049 212 ProSiteProfiles LOB domain profile. 20 122 IPR004883 -
Vra8g1049 212 Pfam Lateral organ boundaries (LOB) domain 21 119 IPR004883 -
Vra8g1049 212 Coils Coil 101 121 - -
Vra8g1049 212 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1049 Vra-Chr8 24301701 24303017 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1049 1 209 AS2 family AT2G42430 49.600 1.43e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra8g1049 LOB 1.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1049 K13944 - gmx:100776145 300.827