Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1044 ATGGAATTCACCTGCCAAGAACATTCCAAAACCTCCAGCGACGAAATTGATCGCTCAGCGGAGCACAATGATGAGATTGGCACTGCCAGATCCTACGAGTGTGTCTTTTGTAAGAGAGGCTTCACCACTGCACAGGCTTTGGGTGGACACATGAATATACACAGAAAAGATAGGGCCAACAGGGCCAAACCCACTTTTCCTTCTTCCACTTCAACCAACCTTGATGACACCAATACCTATGCAGATCTCGCCTTATACTCCCCATCAAATCCCACCTATCTTTCAAGAGGGTCTTACTATTCCACTCTTCCTGATTCAGAGCTAGACCTCAATTACAACTACTACCATCACTTATATTTTCCCTCACACGCTTCTCCTGCTAAATCACCTTCTCATCTACAATACACTGAGCTTTTCTGTCTAGAAAACCAAAGGGATCCTCACCTTCTGTTTGGACAAGATTGGAGACAAAGGGGTTTGACTTTCTACACCAATCCCCTATGTGTACATGGAAATAAAGACAACATACAAAACAACACTGAAGAGGACGATCTGGATTTGGAGCTTAGACTTGGTCATCATCCTTAA 588 0.4388 MEFTCQEHSKTSSDEIDRSAEHNDEIGTARSYECVFCKRGFTTAQALGGHMNIHRKDRANRAKPTFPSSTSTNLDDTNTYADLALYSPSNPTYLSRGSYYSTLPDSELDLNYNYYHHLYFPSHASPAKSPSHLQYTELFCLENQRDPHLLFGQDWRQRGLTFYTNPLCVHGNKDNIQNNTEEDDLDLELRLGHHP* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1044 195 MobiDBLite consensus disorder prediction 1 24 - -
Vra8g1044 195 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Vra8g1044 195 PANTHER OS07G0101800 PROTEIN 1 195 - -
Vra8g1044 195 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Vra8g1044 195 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Vra8g1044 195 Pfam C2H2-type zinc finger 32 56 - -
Vra8g1044 195 Gene3D Classic Zinc Finger 6 85 - -
Vra8g1044 195 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 1 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1044 Vra-Chr8 24182288 24183604 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1044 32 64 C2H2 Transcription Factor Family AT5G43540 81.818 9.64e-15 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra8g1044 zf-C2H2_6 1.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1044 - - ccaj:109812060 274.248