Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1038 ATGCTTGAACTGAACAGAAGCAAAATGAATCACTGTGTTCCAGATTTCGAAATCCAAATGGACGATGACGAAGAATTCCCAATTCCCGTCTCAAAGAAACCCTCAATGCAAAACGACGAGATCATGGAACTATTGTGGCAAAACGGCCAGGTTGTGATGCAGAGCCAAAACCATCGATCACTCAGAAAACCGCCGCATACGTTGGTTGCCGGCGGAGTCTCTCCGGCTAGGGAGATTCGATCCTCTGAAGCAGAAAACTACGGTAACCAACACTTGTTCATGCAAGAAGACGAAATGGCTTCGTGGCTTCACTATCCAATCCACGAAGATCCTCCTCCCTTTGATCACCACGATTTCAGCGCCGACATGCTGAACCCGCCGACAAACGTAATCGCGAGCGTGACTCACAATAGCGCCGCCATACAATCCTCCGTTCGCACGACGGAGCTTCGACATCCTGCTCCTCGTCCGCCGATTCCTCCTTCTCGGCGGCCGGTGCCGGCGGCAAACAGGATGCAGAATTTCTCACACTTCTCGAATCACGGCAATGCGTCGTCGAGTTCGAAGGCCACGGCGGCGCAACCGACGGTGGTGGATTCGTGCGAGACGCCGGTCGCGACGGCGGAGCACGCTGACACCGGTCGCGCGAGCATGACCGCCGCCGATGCAGGTAAGGCGGCGGAGTCTGGAGGAAGGGAGACGGCGACGTGCGATGTGACGGTGACGTCGTCTCCTGGTGGTTCAAGCGGGAGCGCGGAACCAGTTCAGAGGGAACTTGACCGAAAGAGGAAGGGGAGAGAAGCGGAGGAATCAGAATTTCAGAGCGAGGATGTCGATTTTGAATCTCCGGAAGCTAAAAAACAAGGGCGTGGTTCTACATCTACTAAGAGATCCCGTGCTGCAGAAGTCCACAATCTCTCAGAGAGGAGGCGTCGAGATAGAATTAATGAAAAAATGAAAGCTTTGCAAGAACTTATACCTCGATGTAACAAGTCTGACAAAGCTTCAATGTTGGATGAAGCAATTGAATATTTGAAGTCACTGCAATTACAAGTGCAGATGATGTCCATGGGATGCGGCATGGTACCCATGATGTTTCCTGGAATCCAACAGTATTTGCCGCCAATGGGAATGGGAATTGGCATGGGTATGGGCATGGAAATGGGAATGAACAGACCAGTAATGCCATTTCCCAATATGTTAACTAGTTCAACTTTGCCAGCAGCAACTGCAGCTGCTCATTTGGGACCGAGGTTTCCCCCTGTGCCTCCTTTCCATATTCCCCATGTTCCTGCCCCTGATTCATCCAGAATGCCAGCACCAAATCTGTCAGATAATAGTATGCTTAACGCACTTGGTACGCAAGGTCCAGATCAATCACGTATCCCAAACTACACTGATCCTTATCAGCAATACGTCGGCCTCCAACAGGTGCAGTTACAATTAATGCAGGCAATGAACCAACCAAATGTAAGCAAGCCTACTACCAGTAGGGGTCAAGAGAATCCAGAAAAACATCAGTCAGAAGAAACATGA 1536 0.5065 MLELNRSKMNHCVPDFEIQMDDDEEFPIPVSKKPSMQNDEIMELLWQNGQVVMQSQNHRSLRKPPHTLVAGGVSPAREIRSSEAENYGNQHLFMQEDEMASWLHYPIHEDPPPFDHHDFSADMLNPPTNVIASVTHNSAAIQSSVRTTELRHPAPRPPIPPSRRPVPAANRMQNFSHFSNHGNASSSSKATAAQPTVVDSCETPVATAEHADTGRASMTAADAGKAAESGGRETATCDVTVTSSPGGSSGSAEPVQRELDRKRKGREAEESEFQSEDVDFESPEAKKQGRGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYLPPMGMGIGMGMGMEMGMNRPVMPFPNMLTSSTLPAATAAAHLGPRFPPVPPFHIPHVPAPDSSRMPAPNLSDNSMLNALGTQGPDQSRIPNYTDPYQQYVGLQQVQLQLMQAMNQPNVSKPTTSRGQENPEKHQSEET* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1038 511 MobiDBLite consensus disorder prediction 484 511 - -
Vra8g1038 511 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 9 509 IPR031066 -
Vra8g1038 511 SMART finulus 305 354 IPR011598 GO:0046983
Vra8g1038 511 MobiDBLite consensus disorder prediction 172 201 - -
Vra8g1038 511 MobiDBLite consensus disorder prediction 439 466 - -
Vra8g1038 511 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 9 509 - -
Vra8g1038 511 MobiDBLite consensus disorder prediction 255 271 - -
Vra8g1038 511 MobiDBLite consensus disorder prediction 235 251 - -
Vra8g1038 511 Gene3D - 294 357 IPR036638 GO:0046983
Vra8g1038 511 MobiDBLite consensus disorder prediction 142 308 - -
Vra8g1038 511 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 302 377 IPR036638 GO:0046983
Vra8g1038 511 Coils Coil 305 325 - -
Vra8g1038 511 MobiDBLite consensus disorder prediction 484 498 - -
Vra8g1038 511 MobiDBLite consensus disorder prediction 426 466 - -
Vra8g1038 511 Pfam Helix-loop-helix DNA-binding domain 303 349 IPR011598 GO:0046983
Vra8g1038 511 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 299 348 IPR011598 GO:0046983
Vra8g1038 511 CDD bHLH_AtPIF_like 299 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1038 Vra-Chr8 24055505 24061758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1038 9 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.270 4.69e-64 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra8g1038 HLH 6.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1038 - - pvu:PHAVU_007G156200g 793.497