Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1012 ATGGGTCTTAGAGACATCGGGGCTTCACTGCCCCCAGGGTTTCGCTTTTATCCCAGTGATGAGGAGTTGGTCCTTCATTACCTCTACAAAAAAGTCACAAATGAGGAAATTCTAAAGGGTACCCTGATGGAAATTGACTTGCACACATGCGAGCCATGGCAACTTCCAGAGGTGGCTAAGCTTAACGCAAACGAATGGTACTTCTTCAGCTTTCGTGACCGAAAATATGCAACCGGCTACCGAACAAATCGTGCAACGACATCTGGCTATTGGAAAGCCACGGGAAAGGATCGTACGGTTTTTGACCCCTCCACGCGTGAGGTTGTAGGGATGAGGAAGACTTTGGTGTTCTACAGGAACAGGGCCCCGAATGGCATCAAAACGGGTTGGATCATGCACGAGTTTCGCTTGGAGACGCCACATATGCCCCCTAAGGAGGACTGGGTTTTGTGTAGAGTGTTTCACAAAGGCAAAGCAGACAACAGTGCCAAACTCAACTCACAAGTCATGTATGAGAACACAGTTCCATCCCTAACTCTGGCTTCGTCATCTCCAACCAACCAAACCATTGGGTATAACCAACTTCCCCATTTCTCATCCTCAATCACACCCCATCATAATCATTACCATCATCATCATCATCATCATCATCAAAATCAAACCCAAACCCAAACCCAAAACAACAACTCCTTCATGGGTCTCCTTCACTTTTCTAGGGAAACAAATGCAAACTCTAGCATCATCACTCAGATAAGTCCCAAATGTGATGATGGGTATGGGTTTCTATGGGACATGGAGATCGAAGAAAATAGCTTCCATGATGGCGTGGCCTCCAACATGGTCGACGGAATGAGATTCGAGGTTGATAATAATAGTGTGGTCTTGTTATGA 891 0.4613 MGLRDIGASLPPGFRFYPSDEELVLHYLYKKVTNEEILKGTLMEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGYRTNRATTSGYWKATGKDRTVFDPSTREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKADNSAKLNSQVMYENTVPSLTLASSSPTNQTIGYNQLPHFSSSITPHHNHYHHHHHHHHQNQTQTQTQNNNSFMGLLHFSRETNANSSIITQISPKCDDGYGFLWDMEIEENSFHDGVASNMVDGMRFEVDNNSVVLL* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1012 296 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
Vra8g1012 296 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Vra8g1012 296 MobiDBLite consensus disorder prediction 204 219 - -
Vra8g1012 296 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 291 - -
Vra8g1012 296 MobiDBLite consensus disorder prediction 201 225 - -
Vra8g1012 296 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 291 - -
Vra8g1012 296 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Vra8g1012 296 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1012 Vra-Chr8 23281885 23286125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1012 6 229 NAC Transcription Factor Family AT1G56010 47.210 2.50e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra8g1012 NAM 7.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1012 - - gmx:100783645 483.026