Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0997 ATGGCGGCGGCGTCGCGACGGCTCCGGGACCTCCAATCACAGGCGGCGAACAAGATCTGCGTTGACTGCACCCAGAAGAACCCGCAGTGGGCCTCCGTCTCGTACGGCGTCTTCATGTGTCTGGAGTGCTCCGGCAAGCACCGTGGCTTGGGCGTTCACATCTCCTTCGTCCGATCTGTCACCATGGACTCCTGGTCCGAAGTCCAGATCAAGAAAATGGAAGCTGGCGGCAACGATAAGCTCAACGCCTTCCTCGCTCAGTACTCCATCCCCAAGGAGACAGACATCGTTACTAAATACAACACCAACGCCGCCGCCGTCTACCGCGATCGGATCCAGGCCATCGCCGACGGCCGTCCCTGGCGCGATCCGCCGGTAGTGAAGGAAAACCTTGCAGCAGGCAAGGGGAAGCCGCCGGTGACGCAGTCGCAGACGCGAAGAGCTAACGAGGGAGGATGGGACGATTGGGACAACGGGGGGAGTTCGGCGGACATACGGAGCAGGTCAACCGGGGACTTCAGGAGCTTGAACGGCGCGGGTGTGCCGTCGAGGTCTAGGTCGACGGAGGACATCACGCGGTCGCAGCTGGAAGCCTCGGCGGCGAACAAGGAAAGTTTCTTCGCGAGGAAGATGGCGGAGAACGATTCCCGGCCCGAGGGGCTTCCGCCGTCGCAGGGAGGGAAATACGTAGGGTTCGGGTCCAGTCCGCCGCCTCAGCGGAGGAACGATGCTCAAAACGATTATTTATCTGTCGTTTCGCAGGGTATTGGGAAATTATCTTTGGCTGCTGCCTCTGCTGCTCAGTCTGCGGCTAATGTTGTTCAGGCGGGCACGAAGGAGATCACTTCAAAGGTCAAGGAAGGTGGTTATGATCACAAGGTTAATGAAACTGTCACTGTTGTCACTCAGAAGACATCAGAGATTGGACAGAGGACTTGGGGCTTAATGAAAGGAGTTATGGCCATGGCCTCCCAGAAGATCGAGGAGTACACTAAAGATGATACAAACTGGAAGACTGATAACTGGCAACGAAATGAGAGTGATAGAAATGGTTATTATCAGGATTTTAACCAACAGAACAAAGGCTCGAATTCTGCTCCTGGAAGAGAACAATCTTCATCGGGGCAATATAAAACTCATAGCTCAAGCTCTTTGGATGATTGGGATCACCAAGATAGCAGGAAGAAAGAACCAGCTAAAGGATCAACTCCCTATTCATCAGGTGGGCAGTCTAGCACCTTCAACTCAAGCTCTTGGGATGATTGGGAACAAACAGATTCTAGGAAGCAAGAACCAGCTAAAGGATCAGCTCCTCATAATAATGATGATTGGGCTGGTTGGGATAATGCCAAAGAAGATGGATTTGATAATTTGTACCAAGGTGCGTCTAATAAGAAAGGTCATGCTCATAATGGAAAATCGGATGGCACTTGGACAGAGGGAGGCTTTCTCTGA 1455 0.5306 MAAASRRLRDLQSQAANKICVDCTQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEVQIKKMEAGGNDKLNAFLAQYSIPKETDIVTKYNTNAAAVYRDRIQAIADGRPWRDPPVVKENLAAGKGKPPVTQSQTRRANEGGWDDWDNGGSSADIRSRSTGDFRSLNGAGVPSRSRSTEDITRSQLEASAANKESFFARKMAENDSRPEGLPPSQGGKYVGFGSSPPPQRRNDAQNDYLSVVSQGIGKLSLAAASAAQSAANVVQAGTKEITSKVKEGGYDHKVNETVTVVTQKTSEIGQRTWGLMKGVMAMASQKIEEYTKDDTNWKTDNWQRNESDRNGYYQDFNQQNKGSNSAPGREQSSSGQYKTHSSSSLDDWDHQDSRKKEPAKGSTPYSSGGQSSTFNSSSWDDWEQTDSRKQEPAKGSAPHNNDDWAGWDNAKEDGFDNLYQGASNKKGHAHNGKSDGTWTEGGFL* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0997 484 MobiDBLite consensus disorder prediction 346 382 - -
Vra8g0997 484 Pfam Putative GTPase activating protein for Arf 6 106 IPR001164 GO:0005096
Vra8g0997 484 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 404 IPR044519 GO:0005096|GO:0016192
Vra8g0997 484 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 404 484 IPR044519 GO:0005096|GO:0016192
Vra8g0997 484 CDD ArfGap_ArfGap1 4 118 - -
Vra8g0997 484 MobiDBLite consensus disorder prediction 422 436 - -
Vra8g0997 484 MobiDBLite consensus disorder prediction 403 421 - -
Vra8g0997 484 Gene3D Arf GTPase activating protein 1 124 IPR038508 -
Vra8g0997 484 SUPERFAMILY ArfGap/RecO-like zinc finger 6 112 IPR037278 -
Vra8g0997 484 MobiDBLite consensus disorder prediction 119 244 - -
Vra8g0997 484 PRINTS HIV Rev interacting protein signature 17 36 IPR001164 GO:0005096
Vra8g0997 484 PRINTS HIV Rev interacting protein signature 36 53 IPR001164 GO:0005096
Vra8g0997 484 PRINTS HIV Rev interacting protein signature 57 78 IPR001164 GO:0005096
Vra8g0997 484 SMART arf_gap_3 2 121 IPR001164 GO:0005096
Vra8g0997 484 MobiDBLite consensus disorder prediction 337 484 - -
Vra8g0997 484 MobiDBLite consensus disorder prediction 383 399 - -
Vra8g0997 484 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 404 484 - -
Vra8g0997 484 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 404 - -
Vra8g0997 484 MobiDBLite consensus disorder prediction 162 201 - -
Vra8g0997 484 ProSiteProfiles ARF GTPase-activating proteins domain profile. 5 111 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0997 Vra-Chr8 22548056 22552109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0997 6 92 C2H2 Transcription Factor Family AT4G21160 48.864 3.58e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0997 K12492 - gmx:100792658 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0340 3 4061559 4066546 Vra8g0997 8 22548056 22552109 PCT