Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0986 ATGGGAGAAGAAGCAGTTTGTGTGCATGCATTAGATGAAGGAAGGAAGGAAAACAATGAGGAATCGAGGACGGAACTGAAACGTGACTACGACCAATGCGTTAGTGATACTGAACGCCACATGTTTCCTCATAAGAAACAAGTTAAAGAAGTTTCGAACGATGAAGTGCGCTCTGAGGTTTCTAATCCCAATGTTTCTACCGTAGAGCATGCGCTAACTTTTCAAGATATCAGTAGCCAACCAACTGAATCAACGGACGTTAACCATGCAGAATGTGGAGAACTGACGTCTACTTGTTTGGAGAATTCCAGTTCTGATGAGACTTTGAGTGATGAAGCTGGTGATTTGAATATTACTACTACTACAAATAATATTAATAACAACAACAACAACAATACTTCTCAGAGTGACAAGAACACGAGTAGTGCTGCAATGACATCCTGTGTTGTGATGGAAATTCCCAAGCATGCTAGTTCCTCTGGGATCAGGAAGATTACTTTTAAGTTTAGTAAAAAGAAAGAGGATTATGGTTACCAGCCACCTGCTCCTGTGCACCGTTACACTGATGGCAATCACATTGGTTTTCATGGGGTTGATGAATATTTGGCAAGGGATTATTGTAGTGGTGGGTTGGTAGAAAACATGGGATATGCTCATGATGGAGATGTGGAGTCGTACGCTCGCAATATGGAATTGAAAATGTCCAAGAAAGTAGTTCCCAACTGTTACCCTACAAATGTCAAAAAGCTTTTATCAACTGGCATCCTTGACGGAGCTGTAGTGAAGTATATTTATAATCCTGGAAAGGTTGAGCTACAGGGGATTATTGATGCTGGTGGATATTTGTGTGGCTGTTCAATGTGCAATTACTCTAGAATTCTTAGTGCCTATGAGTTTGAGCAGCATGCCGGGGCCAAGACTAGACATCCAAATAATCATATTTTCTTAGAAAATGGAAGACCGATATATAGTATTATACAGGAAATAAAAACGGCTCCACTCAGTATATTAGACGAGGTTATCAAGAATGTGGCTGGTTCCTCTGTTAATGAGGAGTCTTTCCAGGTTTGGAAAGAAAGTCTTCTACACAGCAACGCCAAGGTTCAGGCTTATAAAAATTCTAGCGCCAAACATGTTGGCATGTCTCATACAAACCTAAGTCAATCTGTAGATAGTACTAGCCACTTGTCGTCTTTGCATGTACCAAGTCATTATGAGCAGCTGAAGTATATGAATCAGACAAATGACGAATGGAAACGTGTGATGAAAAAGTCAAGCTCCTATTCTTCTAATTCTGGTGTACTGCTGAAAAGAAGTGCTGATGGTTGCACTAAGAGAAGGGACAATGATTTACACAGGTTACTTTTTATGCCAAATGGGCTACCAGATGGTGCTGAGTTGGCTTATTATGTCAAAGGACAGAAATTACTTGGAGGTTACAAACAGGGAAGCGGTATAGTCTGTGGTTGTTGTGATATTGAGATAAGCCCTTCACAGTTTGAAGCCCATGCTGGAATGGCTGCTAGGCGTCAACCTTATCGACACATATATACTTCCAATGGGTTAACGCTTCATGATATAGCTCTCTCATTGGCAAATGGTCAAAACCTTACCACGGGAGACAGTGATGATATGTGTGCAGTATGTGGAGATGGAGGAGATTTGATTCTTTGTAATGGATGCCCTAGGGCCTTTCATACAGCCTGCTTGGGTTTACAGTGTGTTCCAGACAGTGGTTGGCAATGTCTAAATTGTGGAGATAGTGCTGGTAATGGAAGAGAATCTTCTCTTGTGAGGCCAATCATGATCCGGTTGACACGAGTTGATAAAACACCAGATTTTGAAATGGGTGGATGTGTTGTTTGCAGGGAACATGATTTCAGTGTTGCAAAATTTGATGAGCGAACGGTAATAATTTGTGACCAGTGTGAGAAGGAGTATCATGTTGGCTGCTTGCGGGATATTGGGCTATGTGAGTTGGAAGAGCTGCCCAAGGATAAATGGTTTTGTTGCAGTGACTGCAATCGAATATATGTGGCTCTACAGAATTCAGTTTCTGCTGGAGCAGACAATATACCAGCTTCCTTGTCAGAACTAATAATCAGGAAGCACGAGGAGAAGGGACTATGTACCTATGGTCCCACAGATGATATTCAGTGGAGAATTTTAAGCGGAAAAAGCCGTTATCCGGAACATTTACCGCTGCTTTCAAGAGCTGCTGCAATTTTCCGAGAGTGTTTTGATCCCATTGTTGCAATATCTGGTCGTGATCTGATTCCGGTTATGGTCTATGGGAGAAATATTTCTGGCCAAGAGTTTGGGGGGATGTATTGCATTGTTTTAATAGTGAATTCTGTCGTAGTATCAGCTGGGCTTTTGAGGATTTTTGGCCGTAATGTTGCTGAGCTTCCACTCGTTGCTACTAGCAGAGTACATCAAGGAAAAGGATATTTCCAAGTGTTGTTCTCTTGCATAGAGAGGTTGCTGTCTTCTCTAAACGTAGAAAAGCTGGTGCTTCCTGCAGCAGGGGACGCAGAGTCAATTTGGACTAAGAAATTGGGCTTCCGAAAGATGAGTGAAGATCAGTTATCCAAACATCTCAGAGAGGTGCAGCTAACTCTTTTCAATAAAACTTCAATGCTGGAGAAGACAGTGCAGCAGACTATAGAATGA 2673 0.4179 MGEEAVCVHALDEGRKENNEESRTELKRDYDQCVSDTERHMFPHKKQVKEVSNDEVRSEVSNPNVSTVEHALTFQDISSQPTESTDVNHAECGELTSTCLENSSSDETLSDEAGDLNITTTTNNINNNNNNNTSQSDKNTSSAAMTSCVVMEIPKHASSSGIRKITFKFSKKKEDYGYQPPAPVHRYTDGNHIGFHGVDEYLARDYCSGGLVENMGYAHDGDVESYARNMELKMSKKVVPNCYPTNVKKLLSTGILDGAVVKYIYNPGKVELQGIIDAGGYLCGCSMCNYSRILSAYEFEQHAGAKTRHPNNHIFLENGRPIYSIIQEIKTAPLSILDEVIKNVAGSSVNEESFQVWKESLLHSNAKVQAYKNSSAKHVGMSHTNLSQSVDSTSHLSSLHVPSHYEQLKYMNQTNDEWKRVMKKSSSYSSNSGVLLKRSADGCTKRRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGSGIVCGCCDIEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAVCGDGGDLILCNGCPRAFHTACLGLQCVPDSGWQCLNCGDSAGNGRESSLVRPIMIRLTRVDKTPDFEMGGCVVCREHDFSVAKFDERTVIICDQCEKEYHVGCLRDIGLCELEELPKDKWFCCSDCNRIYVALQNSVSAGADNIPASLSELIIRKHEEKGLCTYGPTDDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSVVVSAGLLRIFGRNVAELPLVATSRVHQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFRKMSEDQLSKHLREVQLTLFNKTSMLEKTVQQTIE* 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0986 890 CDD PHD1_AIRE 545 585 - -
Vra8g0986 890 ProSitePatterns Zinc finger PHD-type signature. 619 674 IPR019786 -
Vra8g0986 890 SUPERFAMILY FYVE/PHD zinc finger 615 672 IPR011011 -
Vra8g0986 890 Pfam Tify domain binding domain 479 528 IPR032308 -
Vra8g0986 890 Pfam Tify domain binding domain 274 328 IPR032308 -
Vra8g0986 890 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 533 611 IPR013083 -
Vra8g0986 890 ProSitePatterns Zinc finger PHD-type signature. 546 585 IPR019786 -
Vra8g0986 890 ProSiteProfiles Zinc finger PHD-type profile. 543 588 IPR019787 -
Vra8g0986 890 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 769 861 IPR016181 -
Vra8g0986 890 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 615 677 IPR013083 -
Vra8g0986 890 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 2 887 - -
Vra8g0986 890 MobiDBLite consensus disorder prediction 119 141 - -
Vra8g0986 890 PANTHER AUTOIMMUNE REGULATOR 2 887 - -
Vra8g0986 890 SMART PHD_3 618 675 IPR001965 -
Vra8g0986 890 SMART PHD_3 545 586 IPR001965 -
Vra8g0986 890 SUPERFAMILY FYVE/PHD zinc finger 541 585 IPR011011 -
Vra8g0986 890 Gene3D - 716 885 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0986 Vra-Chr8 22162209 22178449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0986 1 885 PHD Transcription Factor Family AT3G53680 52.667 0.0 893
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0986 - - vun:114190395 1711.81