Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0970 ATGAAGAGACAGAGAGAAGAGAGCGTAGATTTGGCAAATTGTCTAGTGCTACTCTCCCATCCCACAGAAATCAAACCCCACAAACTTTTCCGTCCTGAGGAATTTGAGTGCAGAACCTGCAACCGTAAGTTTTCTTCGTTTCAAGCTCTTGGCGGCCACAGGTCCAGCCACAAAGCGCCCAAGCAAGACTTGAAAGAAGAGGAAAAAATTCTGAGATTGGGAAATGAGACCAAAAAGCACGAGTGCTCCATTTGTGGTCAAAAATTCTCTCTGGGTCAGGCACTGGGAGGACACATGAAAAGGCACAGAATTGCCCTAAACGAAGGGTTTTCTTCAATAAATCAGTCTCTGGTAAAGGTCCCGATTCTGAAAAGGTCGAATACTACGAGGGTTATGTGCTTGGACTTGAACTTGACCCCTCTGCAGAATGATTTGAAGCTATTGTTTGGCGATAAAGCACCCAGAGTTGATTCCTTCGTCTGA 483 0.4534 MKRQREESVDLANCLVLLSHPTEIKPHKLFRPEEFECRTCNRKFSSFQALGGHRSSHKAPKQDLKEEEKILRLGNETKKHECSICGQKFSLGQALGGHMKRHRIALNEGFSSINQSLVKVPILKRSNTTRVMCLDLNLTPLQNDLKLLFGDKAPRVDSFV* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0970 160 Pfam C2H2-type zinc finger 35 60 - -
Vra8g0970 160 Pfam C2H2-type zinc finger 80 104 - -
Vra8g0970 160 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Vra8g0970 160 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Vra8g0970 160 SMART c2h2final6 35 57 IPR013087 -
Vra8g0970 160 SMART c2h2final6 80 102 IPR013087 -
Vra8g0970 160 Gene3D Classic Zinc Finger 33 55 - -
Vra8g0970 160 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 2 155 - -
Vra8g0970 160 SUPERFAMILY beta-beta-alpha zinc fingers 35 102 IPR036236 -
Vra8g0970 160 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
Vra8g0970 160 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Vra8g0970 160 PANTHER ZINC FINGER PROTEIN ZAT5 2 155 - -
Vra8g0970 160 Gene3D Classic Zinc Finger 62 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0970 Vra-Chr8 21704591 21705242 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0970 1 157 C2H2 Transcription Factor Family AT2G37430 46.552 1.00e-44 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra8g0970 zf-C2H2_6 3.7e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0970 - - gmx:100793243 249.595