Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0969 ATGTATAGTATAACGGAGTATCTTAATGAGGTGAACAAAACGGACTTTTTGACTTCTCAACAATGGCCTATAAATACTCCGTTTCAGCCTCAAAGTGTTCTGCCACATAACCACGTTGAATTAAACATGGTAGCCGTTCTGAAGAGGCAGAGAGAAAAGGAATCACAGGAGGAGTTCCAGTGCAAGACGTGTAACCGCAAATTCTCGTCGTTCCAAGCGTTGGGAGGTCACCGGGCCAGCCACAAGAAGCCCAAGTTGGAGGGAGAAGAAGGCAAGGATCTGAGTCTAAGCCGGAAGCCCAAAACGCACGAGTGTTCCATTTGCGGGCAGGGATTCTCGTTGGGCCAGGCCCTGGGAGGGCACATGAGAAAACACAGGGTAGGCACGAACGAAGGGTTTTCTTCAGTTATTGCGGAAGCACCGCTTCTGAAACGTTGGAATAGCAGCAAGAGGGTTATGTGCTTGGAGTTGGATCTCAACCTAACGCCGTTGGAAAATGACTTGAAGTTGTTGTTCGGAAACAAGGCTCCTACGGTGCATCTTTCCTTGTAG 552 0.4873 MYSITEYLNEVNKTDFLTSQQWPINTPFQPQSVLPHNHVELNMVAVLKRQREKESQEEFQCKTCNRKFSSFQALGGHRASHKKPKLEGEEGKDLSLSRKPKTHECSICGQGFSLGQALGGHMRKHRVGTNEGFSSVIAEAPLLKRWNSSKRVMCLELDLNLTPLENDLKLLFGNKAPTVHLSL* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0969 183 MobiDBLite consensus disorder prediction 80 96 - -
Vra8g0969 183 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Vra8g0969 183 Gene3D Classic Zinc Finger 49 125 - -
Vra8g0969 183 PANTHER ZINC FINGER PROTEIN ZAT5 49 177 - -
Vra8g0969 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 125 IPR013087 -
Vra8g0969 183 Pfam C2H2-type zinc finger 59 84 - -
Vra8g0969 183 Pfam C2H2-type zinc finger 103 126 - -
Vra8g0969 183 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Vra8g0969 183 SMART c2h2final6 59 81 IPR013087 -
Vra8g0969 183 SMART c2h2final6 103 125 IPR013087 -
Vra8g0969 183 MobiDBLite consensus disorder prediction 75 96 - -
Vra8g0969 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
Vra8g0969 183 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 49 177 - -
Vra8g0969 183 SUPERFAMILY beta-beta-alpha zinc fingers 59 125 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0969 Vra-Chr8 21686459 21687314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0969 47 173 C2H2 Transcription Factor Family AT2G37430 55.639 2.51e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra8g0969 zf-C2H2_6 1.2e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0969 - - vra:106771374 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0352 3 4218785 4219466 Vra8g0969 8 21686459 21687314 PCT