Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0956 ATGGGTAACGCCCATGGACACCGCCATCGCAAACGCCCCAACTCCGTTCCTCCGCCCCATATATACGATCACCCTCCACCATTCTCAACCCCACCACCAACCATAGCTAATTCCAACATGCTCTCTCTTCCTTACACCCACGTCGACACCACCCTCCGCGCCCTCGCCGCCCAAGCCGAGGGCTTCGGCCGTTTCGCTGTTGGCGGCCTCCACGGCCCCCTTCACCGCGTCACGTCGCTCGCAGATGATGGACCGGGGTCGCTGCGTGAGGCGTGTCGCGGAAAAGAACCATTGTGGATTGTGTTTGAGGTGTCCGGCACCATTAATCTCTCCTCGTACCTGAACGTGTCGTCTCACAAGACCATCGATGGTCGTGGCCAGAGGATTAAACTTACCGGACATGGGTTACGCCTGAAGGAATGCGAACACGTCATAATCTGCAATTTGGAGTTCGAAGGAGGCAAAGGGCATGATGTTGACGCCATTCAGATCAAACCTAAATCCAAACACATATGGATTGATCGTTGCTCGCTCGCTGATTATGATGACGGACTTATAGACATCACACGTGAAAGCACAGACATTACTATCTCAAGGTGTCACTTCTCTCAGCATGATAAAACCATGCTTATTGGGGCTGATCCATCGCATGTTAACGATAGGTGTATGAGGGTCACTATACACCATTGTTTTTTCAATGGGACGCGACAGAGGCACCCTCGTGTTAGGTTTGCGAAAGTGCATCTCTATAATAATTATATCAGAAACTGGGGCATATATGCTGTGTGTGCTAGTGTGGAAGCCCAGATATTCTCGCAGCATAATATCTATGAAGCTGGACAGAAGAAGGTGGCCTTTAAGTACCTTACCGAGAAGGCAGCAGACAAGGAAGTGGGAACAAGTGGCTACATAAGGTCTGAGGGAGACTTGTTCTTAAATGGTGCTGAACCAGGGTTAATGACTGAGAATGGAAGATGCAACATGTTTCACCCCAGTGAATACTATCCCTCATGGACAGTGGAAGCTCCCACAGAGGATCTTAAACACATTCTTCATCACTGCACTGGATGGCAATCTGTTGCTAGGCCAGCAGATCAAGCACTATGA 1107 0.5005 MGNAHGHRHRKRPNSVPPPHIYDHPPPFSTPPPTIANSNMLSLPYTHVDTTLRALAAQAEGFGRFAVGGLHGPLHRVTSLADDGPGSLREACRGKEPLWIVFEVSGTINLSSYLNVSSHKTIDGRGQRIKLTGHGLRLKECEHVIICNLEFEGGKGHDVDAIQIKPKSKHIWIDRCSLADYDDGLIDITRESTDITISRCHFSQHDKTMLIGADPSHVNDRCMRVTIHHCFFNGTRQRHPRVRFAKVHLYNNYIRNWGIYAVCASVEAQIFSQHNIYEAGQKKVAFKYLTEKAADKEVGTSGYIRSEGDLFLNGAEPGLMTENGRCNMFHPSEYYPSWTVEAPTEDLKHILHHCTGWQSVARPADQAL* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0956 368 MobiDBLite consensus disorder prediction 18 33 - -
Vra8g0956 368 MobiDBLite consensus disorder prediction 1 35 - -
Vra8g0956 368 SUPERFAMILY Pectin lyase-like 58 360 IPR011050 -
Vra8g0956 368 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
Vra8g0956 368 PRINTS Pollen allergen Amb family signature 113 129 IPR018082 -
Vra8g0956 368 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
Vra8g0956 368 MobiDBLite consensus disorder prediction 1 15 - -
Vra8g0956 368 Pfam Pectate lyase 113 276 IPR002022 -
Vra8g0956 368 PANTHER PECTATE LYASE 37 363 - -
Vra8g0956 368 PANTHER PECTATE LYASE 18-RELATED 37 363 IPR045032 GO:0030570
Vra8g0956 368 Gene3D - 44 354 IPR012334 -
Vra8g0956 368 SMART amb_all 70 283 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0956 Vra-Chr8 21294271 21298074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0956 80 368 Polysaccharide Lyase AT3G55140 76.817 8.51e-173 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0956 K01728 - gmx:100814368 663.685