Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0947 ATGGAAGAAACATCAACATCTGTCATCATGGCTGCACTCTCCACCCTCACCCCTTCCCAATTCTCAGATCTCACCCACTCCATTCTATCCACTACCCTTCATCACCATCGCCGTCTCGCCTTTCTCCTTTCTTCCCCGACGCTCTTCTCTCTAACCCTCCACCACCTCCACAACCTCTCTCTCCCCCAGAAGACGCTTCTCATCGCCCGCCACCTCCTCTCCTTTCTCCACCTCCTCACTGCCACCTCCCCGCCGCTGTCCACTGCCACGAGGCAGCGCGACCTCGACGCTGCACTTCTCCTCCTCCTCCTTTGCGAAACGCACAACCACAATTCACATGCCCTCGAGGCACCCTTTTCCCAATGGAGGGTCAACCTTAGCACCATCTTCTCCGATTCATTGTTGGCTCTTTCCTTTGCACCCTTTGGGTCATGCACGGGCTCGACGGTGCTGATTCCCTTCGTTGAGACCGTGACGCGGTGCTGGAGACTCGTCGGTGCACTGGAATGCGGCGGAGTAAAGGAATCGGGGGAGGTGGCTGCGTCGGCTACGGCGGTGGTGGCGCTGCCATCGGTGGAGGTGAGGGCGGGTGGGATAGAGTGTGCGATATGCAGAGAGGAGATGACAATAGGGAGGGACGTGTGCGAGTTGCCATGTCAGCACTTGTTTCATTGGGTGTGTATCTTACCGTGGCTTGGGAAGAGGAACACGTGTCCTTGCTGCAGGTTTCGGTTACCGTCCGATGATGTCGTAGGAGAGATCGAACGGCTGTGGGAAATCTTGGTTAAAACGGCTGCAAAAGATTCGTAG 810 0.5667 MEETSTSVIMAALSTLTPSQFSDLTHSILSTTLHHHRRLAFLLSSPTLFSLTLHHLHNLSLPQKTLLIARHLLSFLHLLTATSPPLSTATRQRDLDAALLLLLLCETHNHNSHALEAPFSQWRVNLSTIFSDSLLALSFAPFGSCTGSTVLIPFVETVTRCWRLVGALECGGVKESGEVAASATAVVALPSVEVRAGGIECAICREEMTIGRDVCELPCQHLFHWVCILPWLGKRNTCPCCRFRLPSDDVVGEIERLWEILVKTAAKDS* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0947 269 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 4 266 - -
Vra8g0947 269 Pfam Ring finger domain 200 242 IPR001841 -
Vra8g0947 269 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 4 266 - -
Vra8g0947 269 ProSiteProfiles Zinc finger RING-type profile. 201 242 IPR001841 -
Vra8g0947 269 SMART ring_2 201 241 IPR001841 -
Vra8g0947 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 253 IPR013083 -
Vra8g0947 269 SUPERFAMILY RING/U-box 197 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0947 Vra-Chr8 21017184 21018695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0947 1 265 C3H Transcription Factor Family AT5G02750 51.064 4.26e-79 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0947 - - pvu:PHAVU_007G161400g 450.284