Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0946 ATGATGGTTAGATCCTGTTGGAAACCAATTGCTGATGGTGATGAAGGAGATGGGAGTGGGAGAGTTGATGGACTTCTATGGTACAAGGATTTGGGAAGCCATCTTTATGGGGAATTCTCAATGGCTGTAGTTCAGGCAAATAGTTCATTAGAGGATCGAAGTGAACTTGAATCTGGACCTTTGAGTTCCAACCCCTCGGGCCCTCAAGGGACGTTTATAGGTGTCTACGATGGCCATGGTGGAAACGAGGCCTCACAGTTTGTCAGTGACAATCTCTTCTGCAATCTCAAAAGGCTTGCAGCTGAACATCAAGGTGTGTCAGAACATGTTATCAAAAGGGCATATTCAGCAACAGAGGAGAGTTTTCTGTCTCTTGTGAAGAAACAGTGGCTGAGTAAGCCTCAGATTGCATCTACGGGAACTTGTTGCTTGGTGGGGGTAATTTGCAATGGAATGATATATATTGCAAATTCTGGAGACTCCCGGGTGGTGTTAGGAAGAGTAGAAAGAGCAACAAGGGAAACAGAAGCTATTCAATTATCTACAGAACACAATGTTAACCAAGAAACAGTGAGAGATGAACTTCGCTCAAAGCACCCTTTTGATTCACAAATCGTGGTATTGAGACAAAACGTTTGGCGTGTGAAAGGCCTCATACAGGTTTCACGATCCATCGGGGACGCATATCTGAAGAAAGCAGAATTCAACAGGGATCCTCTACCAGCAAAATATAGGCTCGCAGAAACATTCTTCAGGCCAATTCTTAGTTGTGAGCCATCAACATCATCCCACACACTCCATCCAGATGATCAATTTCTCATATTTGCTTCTGATGGTTTATGGGAGCATATTACAAACCAAGAGGCTGTTAACATAGTCAACAACAACCCACCAAACGGAATTGCCAGAAGACTTGTGAAAGCTGCACTTAGAGAAGCTGCTAAGAAGTGTGAAATGAGGCTTTCTGACCTCCAAAAGATTGAGCAAGGGATGAGGAGGCACATCCATGATGACATTACAGTTATTGTGGTATTTCTTAACTCCAGAAGTGAGAATACCTCTCTCTGTGGTTCTCCTCTTTCAATCAAGGGAGGTGCCTCTGCCAATTCCTAG 1113 0.4385 MMVRSCWKPIADGDEGDGSGRVDGLLWYKDLGSHLYGEFSMAVVQANSSLEDRSELESGPLSSNPSGPQGTFIGVYDGHGGNEASQFVSDNLFCNLKRLAAEHQGVSEHVIKRAYSATEESFLSLVKKQWLSKPQIASTGTCCLVGVICNGMIYIANSGDSRVVLGRVERATRETEAIQLSTEHNVNQETVRDELRSKHPFDSQIVVLRQNVWRVKGLIQVSRSIGDAYLKKAEFNRDPLPAKYRLAETFFRPILSCEPSTSSHTLHPDDQFLIFASDGLWEHITNQEAVNIVNNNPPNGIARRLVKAALREAAKKCEMRLSDLQKIEQGMRRHIHDDITVIVVFLNSRSENTSLCGSPLSIKGGASANS* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0946 370 MobiDBLite consensus disorder prediction 54 75 - -
Vra8g0946 370 Pfam Protein phosphatase 2C 56 315 IPR001932 -
Vra8g0946 370 MobiDBLite consensus disorder prediction 54 70 - -
Vra8g0946 370 PANTHER SERINE/THREONINE PHOSPHATASE FAMILY, 2C DOMAIN PROTEIN 3 367 - -
Vra8g0946 370 CDD PP2Cc 36 346 IPR001932 -
Vra8g0946 370 PANTHER ALPHABET, ISOFORM E-RELATED 3 367 - -
Vra8g0946 370 Coils Coil 307 327 - -
Vra8g0946 370 Gene3D - 29 354 IPR036457 -
Vra8g0946 370 SMART PP2C_4 32 344 IPR001932 -
Vra8g0946 370 SUPERFAMILY PP2C-like 47 348 IPR036457 -
Vra8g0946 370 ProSitePatterns PPM-type phosphatase domain signature. 72 80 IPR000222 GO:0043169
Vra8g0946 370 ProSiteProfiles PPM-type phosphatase domain profile. 35 346 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0946 Vra-Chr8 20978720 20980949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0946 2 365 PP2C-type Phosphatase Gene Family AT3G12620 64.674 4.65e-178 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0946 K01102 - gmx:100819870 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0372 3 4422152 4424404 Vra8g0946 8 20978720 20980949 PCT