Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0939 ATGGAGAATATGAATACATCTTTGGATGATATTGAAATTGATCAATTACATGGCAAAGTTGCAGAAGATATAAATGAAAACCATGTTCAACCTAACTCAATCCCTCCATCAGTTGGAATGGTTTTTGAAAGTGTTAATCAAGCCAAGTCATTTTATAGACAATATGCAATATCAAAGGGCTTTGGAATTCGAACAAGGAGTTCAAGGAAGAACAACAAAAACGAATTATGTTACTTCATGATGGTGTGTTCTAGGGCTGAAAAATTTGTCGCATCCAATCAAAATGAAATGATTGGACGTCCAACACAGGCTAATGATTGTGCAGCTCGAATGATTGTATCAAAAAGAGATGAGAAGTGGTACATTTCAGCATTTGATGATGTACATACTCATGATCTTAGTCCAACAAAGTCAAGATTGTTCCGAGGCAATAAAAGGATGAATCTGAATGTGAAGAGAACACTAGACTTAAATGCAGAAGCAGGAGTTAGGATTAACAAGAGTTTTCGATCCTTGGTTTGTGCTACAGGAGGTTATGAAAACATGGAGTTTGTGGAACAAGATGTTAGAAATTATGTCGCCAAACAGAGAAGAGCATTATCAAAAGATGGTGATGCCAAGGCACTCTTAAACCATTTCTCTTCCATGAGAGAATTGAATAAGGATTTCTTTTTCAACATTGATGTTGATGACAACAACCACATATTGAATGTATTTTGGGCTGATGCACGAAGTAGGGCAGCTTGTGAGTACTTTGGTGATGTCATATCTTTTGACACAACATACTTAACAAATAAGTATGACATGTCGTTTGCTCCTTTCGTTGGCGTCAACCACCATGGTCAATCAATATTGTTAGGTTGTGGATTGTTATGTTCAGAGGACACAGATTCATTTGTTTGGCTATTTAATTCATGGCTTCGGTGCATGTCCAATAGAGCGCCCCAAGGAATTGTTACCGATCAATGCAAAGCAATGAAGAAAGTAATAGAAATCGTGTTTCCAAACACTCGTCATAGGTGGTGTTTGTGGCATATAATGAAAAAAACACCTGAGAAGTTACAAGGCTATGCCGCTTACAAAGATATCAAGCGACAACTTAAGCAAGTTGTGTACAATTCTGATTCAGTTGATGACTTTGTTTATGGTTGGGAAAGGATGGTAACAATATTTTCACTACAAACAAACGAATGGCTCTGTTCACTTTACGAAGAGCGAAGCAGGTGGGTTCCTTGTTACCTGAGAAACAATTTTTGGGCTGGCATGTCAGCCACTCAAAGAAGCGAGAGTATGAATGCATTTTTTGATGAATATATTAACTCACAAACTACTCTTCAAGAATTTGTTAAACAATATGACAATGCACTACAACACAAGACAGAAAAAGACACTCAAGCTGACTTCACATCCTTAAACACAACTCTTCCATGTGGGTCACAATCACTCATTGAGCGACAATTCCAAAAGAATTACACACATGCTAAGTTTGCAGAAATACAGTCAGAATTTAGAGGTAAAATTAATTGTTTTGTTGACGGTGTTGTTGTAGAAGATAAATCATCATATTACAAGGTGACAGAGGACTTCATTCATAATGAGATAAGGGAAGAGAGGGTATTCAAGGTTACATTTGAACGAGATACAAAGAATGTGAGTTGCAGTTGTTTGCTTTTTGAGTTTAGGGGTATTATTTGTAGACATTGTGTATGTGTCCTGGCAAAAGAGCGAGTAACACAGCTTCCTGCTAAGTACGTACTCACAAGATGGTGTAAAAATGTCCGCAGAAAACACACGTATATTAGAGCAACATACAACAACAAAGAAAAGGATCCACATATTGAACGGTATGATAACTTATGCAAGACTTTTGCTGATATTGCTGAGATTGCGTGTGAGTCAACAAACATGACAAAATTATTGGTAGACCACCTTAGATCATTTGTGGACCATCATGGCCTACAAATTTCACCTTCACCTTCACCGTACGTCAACAACACCACTCACAAAGAACAACAACACCTGCATCATACTAACATAGCTCATGATGTAGACACAAATGCAAACAATGTTGACATCGAAAGCCCTCAAGTTGTGAAGCGAAAGGGTCGACCTAGGACAAAAAGGTTGAAATCCACATCTTAA 2142 0.3758 MENMNTSLDDIEIDQLHGKVAEDINENHVQPNSIPPSVGMVFESVNQAKSFYRQYAISKGFGIRTRSSRKNNKNELCYFMMVCSRAEKFVASNQNEMIGRPTQANDCAARMIVSKRDEKWYISAFDDVHTHDLSPTKSRLFRGNKRMNLNVKRTLDLNAEAGVRINKSFRSLVCATGGYENMEFVEQDVRNYVAKQRRALSKDGDAKALLNHFSSMRELNKDFFFNIDVDDNNHILNVFWADARSRAACEYFGDVISFDTTYLTNKYDMSFAPFVGVNHHGQSILLGCGLLCSEDTDSFVWLFNSWLRCMSNRAPQGIVTDQCKAMKKVIEIVFPNTRHRWCLWHIMKKTPEKLQGYAAYKDIKRQLKQVVYNSDSVDDFVYGWERMVTIFSLQTNEWLCSLYEERSRWVPCYLRNNFWAGMSATQRSESMNAFFDEYINSQTTLQEFVKQYDNALQHKTEKDTQADFTSLNTTLPCGSQSLIERQFQKNYTHAKFAEIQSEFRGKINCFVDGVVVEDKSSYYKVTEDFIHNEIREERVFKVTFERDTKNVSCSCLLFEFRGIICRHCVCVLAKERVTQLPAKYVLTRWCKNVRRKHTYIRATYNNKEKDPHIERYDNLCKTFADIAEIACESTNMTKLLVDHLRSFVDHHGLQISPSPSPYVNNTTHKEQQHLHHTNIAHDVDTNANNVDIESPQVVKRKGRPRTKRLKSTS* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0939 713 SMART 26again6 551 578 IPR006564 GO:0008270
Vra8g0939 713 Pfam MULE transposase domain 255 349 IPR018289 -
Vra8g0939 713 PANTHER OS03G0843700 PROTEIN 19 629 - -
Vra8g0939 713 Pfam SWIM zinc finger 552 572 IPR007527 GO:0008270
Vra8g0939 713 Pfam FAR1 DNA-binding domain 50 134 IPR004330 -
Vra8g0939 713 ProSiteProfiles Zinc finger SWIM-type profile. 540 576 IPR007527 GO:0008270
Vra8g0939 713 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 19 629 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0939 Vra-Chr8 20820601 20822742 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra8g0939 MULE 8.6e-33 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0939 - - vra:106770356 1468.75