Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0935 ATGGCGCTGTGGATGGAAAAGGGTTCGGAGCCCTTAACGGAAAGCGAGAAGGCTGACCTTGAAGCCATTGCTGCACTCAAAGAGTCTGCTGCCTTTGAATTCAAGGAAAAGGGTAACCAATATGTGAAGATGGGTAAGAAGCATTATTCTGATGCCATTGATTGCTACACAAGGGCAATTGATCAGAAGGCATTGGGTGACTCTGAGACCTCTATTATTTTTTCAAATAGAGCCCACGTGAATTTGCTGCTAGGAAATCTTAGACGTGCTCTCGTAGATTCTCAAGAGGCCCTCAAGTTGTGCCCTTCAAATATAAAGGCAATTTATAGAGCTGCCAAAGCTTCCCTTTCACTAAATATGTTGGCTGAAGCAAGAGAGTATTGTCTGAAGGGTCTTCAGTTGGACCCCAATAATGAGGATTTGAAGAAGCTTGACAGACAGATTGATCTGAAGATATCAGAGAAGGAAAAACATGAGGCTCAAGTCTCGAAGGCTGTTGCAGAGGCAAAAGACCTTGTGTCTGCTATAGAATATAGAGGCTTGAAGATCGGAAAGGCAATGTATCGAGAACTTACTGGATTAAAGAAACCTGTGCTGGATAAAAGTAATATCCTTCATTGGCCTGTTGTTCTTCTGTATGCAGAGGTTATGTCTAGTGACTTCATTGAGGATTTCTGCGAGACTGACATGTTTTCGGTTCACCTTGATATGATGTTTGCAGAAGATCAGCCTTTGTCATGGGATGTTGAAAACAACTACAAACGTGAATTAATTGAATTATACTATGAGGCTGGTTCTGGACATTGTCTATCGAAGGAAAAACTTCTTTGTTGTCTATTAGAAGGAACTGCAGCTGCTCACAGTGATAGTGTTGGTGATGAAGAGAAAGATGCTGTTGAGGATTATAAGCAACAAACGGGTTCCCCAAAATGGATCAAAGTGAATGAAAGGAGGACACTCCATGATGTTCTCAAAGAGCCTAATTTCATCATTCTTGGGATCCCAGTCTTCTATGTTATATCGAAGAGATCCAGCTTTTACAACAAGTTCAAAGCTGGAAAGTGGGCTCCTCCAAATGTATGA 1083 0.4164 MALWMEKGSEPLTESEKADLEAIAALKESAAFEFKEKGNQYVKMGKKHYSDAIDCYTRAIDQKALGDSETSIIFSNRAHVNLLLGNLRRALVDSQEALKLCPSNIKAIYRAAKASLSLNMLAEAREYCLKGLQLDPNNEDLKKLDRQIDLKISEKEKHEAQVSKAVAEAKDLVSAIEYRGLKIGKAMYRELTGLKKPVLDKSNILHWPVVLLYAEVMSSDFIEDFCETDMFSVHLDMMFAEDQPLSWDVENNYKRELIELYYEAGSGHCLSKEKLLCCLLEGTAAAHSDSVGDEEKDAVEDYKQQTGSPKWIKVNERRTLHDVLKEPNFIILGIPVFYVISKRSSFYNKFKAGKWAPPNV* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0935 360 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 356 - -
Vra8g0935 360 SMART tpr_5 31 66 IPR019734 GO:0005515
Vra8g0935 360 SMART tpr_5 71 104 IPR019734 GO:0005515
Vra8g0935 360 SMART tpr_5 105 138 IPR019734 GO:0005515
Vra8g0935 360 SUPERFAMILY TPR-like 22 159 IPR011990 GO:0005515
Vra8g0935 360 Gene3D Tetratricopeptide repeat domain 27 172 IPR011990 GO:0005515
Vra8g0935 360 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 356 - -
Vra8g0935 360 Pfam Cns1/TTC4 Wheel domain 201 268 IPR044059 GO:0051879
Vra8g0935 360 Coils Coil 141 161 - -
Vra8g0935 360 Pfam Tetratricopeptide repeat 106 138 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0935 30 161 Calmodulin-binding Proteins AT3G25230 31.469 4.62e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0935 K24927 - gmx:100783179 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0935 8 20758564 20762032 Vra8g0935 8 20758564 20762032 ECH