Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0933 ATGGATACAACCCCAAATGACGTGAACGACCTAGCACAGTCCAATGGTGAGCCTGGTGAACCCTATGATACTTGTCAGGTCAAGGAGCCTAGGATTAATATGTGTTTTGATACAATGCAAGATGCAAAGAAATTTTACACCAATTACGCAATTACTTGTGGATTTGCTGTGAGGACAAGAACTTCAAAAAAAGATGAGGACAATAACGTCAACTACTTGCGATTAGTTTGTTCAAGGGAAGGGAAATATGTATCTGCCATCAAACCTGAGGTGAAAACACATCCAAGTCAAACTAATCAATGTCCAATTGGCATTACCATTACAAGAAAGGGCGATAAATGGTTTATAAAAACCTTCTTGCTAGAACACAGCCACGATTTATGCCCGAATACATCTAAGCTAATCCCAGGAAATAGAAAATTAAGCATGCAAGCGAAGCACACGCTGGAGGTAAATGACGATGCGGGAGTTCGGATAAATAAGAGTTACCTTAGCATCGTTAGCGATGCAGGGGGATTTGAGAACATGGACTTTGTTGAACGAGATGCACGCAACTACATTGTGCAACACAGAAGATCTTTATGTAAAGACGGTGATGGTCAAGCGCTCTTAAGACACTTTTCATCAATGAAGGATTTGAACAACGACTTCTTCTATGACATAGCATTGGACGAAGGAAATAGAATATGTAGTGTGTTTTGGGCAGATGCAAGAAGTAGAGCTGCATGTGCAGAATTTGGTGATGTGGTGTCCTTCGACACCACTTACTTGACAAATAAGTACGACATGCCCTTTGCACCATTTGTTGGACTGAACCACCATGGTCACTCCATTTTACTTGGATGTGGATTGCTTTCTTCCGAAGACACCTTGTCATTTGTTTGGTTGTTTGAATGTTGGTTTAGATGCATGGGAAATAAGGCACCTGATGGCATAATAACTGATCAATGCAGGGCAATGGCTAATGCCATTGAACAGGTTTTCCCTCAAACAAGACACAGGTGGTGTTTATGGCACATAATGAAGAAGTTGCCAGAAAAATTTCAAGGATACAAAAATTATGTTGCCATCAAAACAGATATACACGCGCTTGTATATGACTGTGGGTCGCAGATGGACTTTGAAAATGGATGGGAAGAACTACTGAGAAATCATGCATTGGAGGGTAATGATTGGTTATGTAATCTTTATGATGAAAGACAAAAATGGGTACCTTGTTACTTAAGGAATGATTTCTGGGCGGGTATGTCAACCACACAAAGAAGTGAGGGCATGAATGCTTTCTTTGATGGATTTATAAATTCAAGCACCACACTTCAACAATTCGTGGTACAATTTGACAATGCCCTTAGAGTTAAGGCACAAAAAGAAATACAGGCTGACTTCTCCTTCCTGAACACCACGGTTGGCTGTGGCTCGCAGTCACCAATCGAGAGACAATTTCAGTTGGAGTACACACATGAGAAGTTTGAGGAAGTCCAAACAGAGTTTCGCTCTAGGATGAATTGTTTTATCAAGAACAGTGTTAAGGACAATTTACTTAATATGTACACAGTCAAAGAGGAGCGCGTGTTCGAGGGGAAATGTGCCGATAAATATTATACAGTTCAATTTGATCCACTAACTAAAAGTACCACATGTTCTTGCCTCTTATTTGAGTTCAAAGGCATCATTTGTCGGCATTCGTTGTTAGTATTTGGTCAGGAAGATGTGTGCAATGTGCCATCCAAATACATTCTTCGGCGATGGAGTAAAAATATCTGTAGAAGGCACACACTCATTAGAGCAGTGTACGGTACCTCAAAGCATCAACCTACAATGGAAAGATACCAACAATTGTGCAAAAAATTCTATGATATAGCGGAGGTCGCTTGTGAGTCCGAGGTTCTTTCAAATGACTTAGAAAAAGATCTTCAATCACTTGCTCAAAAATTTGGTTGTAGTACATCCATGTGTACTAAGATTATTAGTGATGGCGGTGAATTGAGATATGGATATCCAGTCGGCAGTCCCCCTCCTGACACTGCAGGGGGAAATGAAGACGTACTTGTGCGCAGCCCTTTAGCAGTGAAGCGAAAAGGTCGACCACGCACAAACAGGTTAAAGTCTACCGTGGAAAAGAAAACAAGAAAAGGAAGAACTCCTTCAGCAAAAAAGTCCTCAACAGCAGTTCTACAATACTCTGAAACAACATTAGCTGACGTTACACAAAGTGTCGAGGTCGTTCCATTTCCATACCAATTATCAGAGCAATTCGGCGTGGTTCCATCAGGATTTATGTCCTTGTTATCATCTGTACATAACACTTTCGACAATACCATAGTTGGATGA 2331 0.408 MDTTPNDVNDLAQSNGEPGEPYDTCQVKEPRINMCFDTMQDAKKFYTNYAITCGFAVRTRTSKKDEDNNVNYLRLVCSREGKYVSAIKPEVKTHPSQTNQCPIGITITRKGDKWFIKTFLLEHSHDLCPNTSKLIPGNRKLSMQAKHTLEVNDDAGVRINKSYLSIVSDAGGFENMDFVERDARNYIVQHRRSLCKDGDGQALLRHFSSMKDLNNDFFYDIALDEGNRICSVFWADARSRAACAEFGDVVSFDTTYLTNKYDMPFAPFVGLNHHGHSILLGCGLLSSEDTLSFVWLFECWFRCMGNKAPDGIITDQCRAMANAIEQVFPQTRHRWCLWHIMKKLPEKFQGYKNYVAIKTDIHALVYDCGSQMDFENGWEELLRNHALEGNDWLCNLYDERQKWVPCYLRNDFWAGMSTTQRSEGMNAFFDGFINSSTTLQQFVVQFDNALRVKAQKEIQADFSFLNTTVGCGSQSPIERQFQLEYTHEKFEEVQTEFRSRMNCFIKNSVKDNLLNMYTVKEERVFEGKCADKYYTVQFDPLTKSTTCSCLLFEFKGIICRHSLLVFGQEDVCNVPSKYILRRWSKNICRRHTLIRAVYGTSKHQPTMERYQQLCKKFYDIAEVACESEVLSNDLEKDLQSLAQKFGCSTSMCTKIISDGGELRYGYPVGSPPPDTAGGNEDVLVRSPLAVKRKGRPRTNRLKSTVEKKTRKGRTPSAKKSSTAVLQYSETTLADVTQSVEVVPFPYQLSEQFGVVPSGFMSLLSSVHNTFDNTIVG* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0933 776 ProSiteProfiles Zinc finger SWIM-type profile. 534 570 IPR007527 GO:0008270
Vra8g0933 776 SMART 26again6 545 572 IPR006564 GO:0008270
Vra8g0933 776 PANTHER OS03G0843700 PROTEIN 26 629 - -
Vra8g0933 776 Pfam MULE transposase domain 249 343 IPR018289 -
Vra8g0933 776 Pfam FAR1 DNA-binding domain 44 128 IPR004330 -
Vra8g0933 776 MobiDBLite consensus disorder prediction 693 722 - -
Vra8g0933 776 Pfam SWIM zinc finger 534 566 IPR007527 GO:0008270
Vra8g0933 776 MobiDBLite consensus disorder prediction 1 23 - -
Vra8g0933 776 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 629 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0933 Vra-Chr8 20708555 20710966 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra8g0933 MULE 1.7e-33 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0933 - - var:108341250 1117.45