Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0922 ATGAAGTGTCTACGGTCAGGAGAGTCGTTGGGAGGAGCTGATGAAGTGTTTCCTTCTTCTGGATCTCTTGCAAGTGCAACCAAGGATTTTTCAGCTAGTGAACACTCTTGCTTAGGCGAACACATTGATAAGAAGCCGGACACTGGGAACATAGAAGAAGCAGAATCATCCTTGCGTGAGAGTGGTGTCTTGAACTATGAGGAAGCTAGAGCTCTGCTAGGAAGATATGAATATCAGAAAGGAAATATAGTAGCTGCTTTACATGTCTTTGAGGGAATAGACATAGGTGTTGTGACTCCTAAGATCAAAATTGCCCTTTCCAGAAGCAGAGAACGCCGCAAGAAACATTCTCAAAATCATGCTGAACCACAAATGTCGATACATTCTGTTGGCTTGTTGTTGGAATCTGTCTTCCTCAAAGCAAAATCTTTGCAGATTCTTGAAAGGTTTAAAGAGGCTGCCCAATCTTGCAAAGTTATTTTGGATATAGTGGAATCTTCATTACCTGAAGGCTTGCCTGATAACTTCGGTGCTGAATGTAAATTACAGGAGACCCTGAACAAGGCAGTTGAGCTGCTTCCAGAATTATGGAAACTTGCTGATTGTCCACGTGAAGCTATTTTGTCTTACCGACGAGCACTACTTCATCAATGGAATCTTGATGCAGAGACTATAGCAAAAATTCAGAAAGAATTTGTTGTTTTTCTTCTTTACAGTGGAGGAGAAGCCACACCGCCCAATCTCCGTTCCCAAATGGATGGCTCATTTGTACCTAGAAATAACATAGAAGAGGCTATACTTATCTTAATGATTTTGTTAAGAAAAGTCACTCTAAATAGAATTGAGTGGGATCCTTCAATTTTAGACCACCTCTCATTTGCTCTGTCAGTTTCTGGAGATTTGACGGCTTTAGCCAATCAATTGGAAGAATTGCTTCCACGGACAATTACTAGAAGTGAAAGGTACTACACTCTAGCTCTTTGTTATTATGGAGCAGGTAGGGATCTGGTAGCACTGGATTTTCTCAGAAAGTTGTTGAGGAGTAGAGAGGACCAAGACCATGTTCCTGGTTTGTTAATGGCTTCTAAGATTTGTTGTGAGAACTGTTCTCTTGCAGAAGAAGGAGTAAGCTTTGCCAAGCGAGTGCTTCGGAACTTGGATGGCAGATGTAATCAGCGAGAAGATCATGCTAATTTCTTTCTTGGTGTCTCACTTTCAGCCCAGTCGAAACTGGCTATTTCTGATTCTGAAAGGTTTAAGAGACAATCTGAGGCACTTCATGCCCTAGAAACTGCTGCCAGAACAAGAAACCCCCTTGTACTATACCATCTCAGTCTAGAATATGCAGAACAAAGGAAGTTGGATGCTGCACTTCATTATGCAAAATGCTGCATAAAACTGGAAGGTAGTTCTAATATTAAAGGATGGTTGTTGTTAGCCCGGATATTGTCTGCTCAAAAGCAGTTTCTGGATGCCGAATCTGTCATCGATTCTGCTTTGGATCAAACTGGAAAATGGGATCAGGGTGATTTGTTGCGAACAAAAGCTAAACTTCAAATTGCACAGGGCAAGTTAAGGAACGCCATTGAGACATATACTCAGCTTCTTGCTGTTCTTCAAATTCAGAGTAAAGGTTTTGGTTCTGGAAAGAAGCTATATAAGGACAATAGAGATCGTGCTAGGAACTTGGAAGTGGAAATATGGCATGATATTACTTATGTATATATCAGTCTTTTACAGTGGCATGATGCAGAGGTGTGTCTTTCAAAATCCAAGGCGATCAAACCACTCTCTGCATCTAGATGTCATGCAATAGGCGTAATGTACGAAGCAAAGGGCCATTACAAAGAGGCTCTAAAATCTTATGGTGATGCTTTGGACATTGATCCTGGCCATGTCCTTAGCTTAGTCTCCAGTGCTGTAGTTCTTAAACGATGTAGTAGCCACTCAAATCCAACAGTTAAAAGCTTTTTGATGGAAGCACTACGACACGACAGATTCAATGCTTCTGCTTGGTATAATCTTGCCCTTCTTCACAAAGCTGAGGGCACAGCATCATCATTAGTTGAAGCTGCAGAATGTTTTCAAGCTGCACATTTTCTTGAAGAATCTGAACCTGTTGAACCTTTCAGATGA 2136 0.4125 MKCLRSGESLGGADEVFPSSGSLASATKDFSASEHSCLGEHIDKKPDTGNIEEAESSLRESGVLNYEEARALLGRYEYQKGNIVAALHVFEGIDIGVVTPKIKIALSRSRERRKKHSQNHAEPQMSIHSVGLLLESVFLKAKSLQILERFKEAAQSCKVILDIVESSLPEGLPDNFGAECKLQETLNKAVELLPELWKLADCPREAILSYRRALLHQWNLDAETIAKIQKEFVVFLLYSGGEATPPNLRSQMDGSFVPRNNIEEAILILMILLRKVTLNRIEWDPSILDHLSFALSVSGDLTALANQLEELLPRTITRSERYYTLALCYYGAGRDLVALDFLRKLLRSREDQDHVPGLLMASKICCENCSLAEEGVSFAKRVLRNLDGRCNQREDHANFFLGVSLSAQSKLAISDSERFKRQSEALHALETAARTRNPLVLYHLSLEYAEQRKLDAALHYAKCCIKLEGSSNIKGWLLLARILSAQKQFLDAESVIDSALDQTGKWDQGDLLRTKAKLQIAQGKLRNAIETYTQLLAVLQIQSKGFGSGKKLYKDNRDRARNLEVEIWHDITYVYISLLQWHDAEVCLSKSKAIKPLSASRCHAIGVMYEAKGHYKEALKSYGDALDIDPGHVLSLVSSAVVLKRCSSHSNPTVKSFLMEALRHDRFNASAWYNLALLHKAEGTASSLVEAAECFQAAHFLEESEPVEPFR* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0922 711 PANTHER PROTEIN NPGR2 1 711 - -
Vra8g0922 711 SUPERFAMILY HCP-like 420 536 - -
Vra8g0922 711 ProSiteProfiles TPR repeat profile. 599 632 IPR019734 GO:0005515
Vra8g0922 711 SUPERFAMILY TPR-like 135 462 IPR011990 GO:0005515
Vra8g0922 711 SMART tpr_5 669 705 IPR019734 GO:0005515
Vra8g0922 711 SMART tpr_5 509 542 IPR019734 GO:0005515
Vra8g0922 711 SMART tpr_5 438 471 IPR019734 GO:0005515
Vra8g0922 711 SMART tpr_5 473 506 IPR019734 GO:0005515
Vra8g0922 711 SMART tpr_5 599 632 IPR019734 GO:0005515
Vra8g0922 711 SMART tpr_5 134 167 IPR019734 GO:0005515
Vra8g0922 711 SMART tpr_5 565 598 IPR019734 GO:0005515
Vra8g0922 711 SMART tpr_5 319 352 IPR019734 GO:0005515
Vra8g0922 711 PANTHER PROTEIN NPG1 1 711 IPR043376 -
Vra8g0922 711 Pfam Tetratricopeptide repeat 602 632 IPR013105 -
Vra8g0922 711 SUPERFAMILY TPR-like 510 683 IPR011990 GO:0005515
Vra8g0922 711 Gene3D Tetratricopeptide repeat domain 544 706 IPR011990 GO:0005515
Vra8g0922 711 Gene3D Tetratricopeptide repeat domain 103 543 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0922 Vra-Chr8 20498902 20504825 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0922 1 711 Calmodulin-binding Proteins AT4G28600 57.953 0.0 777
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0922 K21843 - gmx:100800762 1273.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0922 8 20498902 20504825 Vra8g0922 8 20498902 20504825 ECH
Vra8g0922 8 20498902 20504825 Vra3g0205 3 2376958 2381258 PCT