Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0920 ATGGAGCATGTGATTGGTGGCAAGTTTAAATTGGGAAGGAAAATTGGGAGCGGGTCTTTTGGGGAGCTCTATTTAGGTGTTAATATACAAACTGGAGAGGAGGTGGCTGTTAAGCTGGAGCCTGTGAAGACCAGGCATCCACAGCTTCACTATGAGTCAAAACTGTATATGCTTCTTCAAGGAGGAACGGGGATTCCCCACCTCAAGTGGTTTGGAATTGAGGGAGACTACAATGTCATGGTTATTGACCTTCTTGGACCAAGTTTGGAAGATTTGTTCAATTATTGTAACCGGAAGTTCACGTTGAAGACAGTGTTAATGCTTGCTGATCAGCTGATTAACAGAGTTGAATATATGCATTCCAGAGGTTTCCTTCACCGTGACATCAAGCCCGACAATTTCTTAATGGGTCTAGGACGGAAAGCAAATCAAGTGTATGCCATTGATTATGGCCTTGCAAAAAAATATAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGTACAGCACGCTATGCAAGTGTCAATACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTAGAATCTCTTGGTTACGTGCTCATGTATTTCTTAAGAGGAAGTCTTCCCTGGCAGGGACTAAAGGCTGGCACCAAAAAACAAAAATATGATAAAATCAGTGAGACAAAGGTGTCTACTCCCATAGAGGTGCTTTGCAAATCTTATCCCTCTGAATTTGTATCATACTTCCACTATTGCCGTTCATTGCGATTTGAGGACAAACCAGATTATTCATATTTAAAGAGACTTTTCCGAGACCTGTTTATTAGAGAAGGCTATCAATTTGACTACATTTTCGACTGGACTATGTTAAAGTATCCACAGATCAGTAGTAGCTCAAGAGGACGGCAGCATGGCACTGGCAAGGCAGCTGGGCAAGCAAGTCCACATGTACAAAAGCCAGAAAAAATTTCAGTTGGGAAAGACATTCGAGAGAAATTCTCTGGTGCAGTTGAAGCATTCTCCAGGAGGAATCCTGCAGGTTCGAGTCCTCACGTTGATCATGTCAAACAGAGGAGTTTTGAGGATGTACCGGTGCAAAAGGACATGCACTATGGCCAGCACAATACTGGTCGATATGGCAGCAGTTCTAGAAAAGCCATGATCACATCAAACAAGCCAGTTTCCTCAGGTGATCATACTGGCAGGCCAACCATGACTGGGAGCCGTCCATCTGGTTCTAATAGAGTTCAACCGGCATACGACACCAAACAAGCAAATTATGCACGAGGTGCTGGTGTCCGAGGCAGAGGCAACCGCGATGATCCTCTGAGAAGCTTTGAGCTCCTCAACATCAGGAAGTAA 1371 0.4391 MEHVIGGKFKLGRKIGSGSFGELYLGVNIQTGEEVAVKLEPVKTRHPQLHYESKLYMLLQGGTGIPHLKWFGIEGDYNVMVIDLLGPSLEDLFNYCNRKFTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYAIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISETKVSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYIFDWTMLKYPQISSSSRGRQHGTGKAAGQASPHVQKPEKISVGKDIREKFSGAVEAFSRRNPAGSSPHVDHVKQRSFEDVPVQKDMHYGQHNTGRYGSSSRKAMITSNKPVSSGDHTGRPTMTGSRPSGSNRVQPAYDTKQANYARGAGVRGRGNRDDPLRSFELLNIRK* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0920 456 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0920 456 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vra8g0920 456 MobiDBLite consensus disorder prediction 392 425 - -
Vra8g0920 456 PANTHER CASEIN KINASE-RELATED 1 439 - -
Vra8g0920 456 Gene3D Transferase(Phosphotransferase) domain 1 1 367 - -
Vra8g0920 456 MobiDBLite consensus disorder prediction 301 328 - -
Vra8g0920 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vra8g0920 456 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0920 456 MobiDBLite consensus disorder prediction 392 424 - -
Vra8g0920 456 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Vra8g0920 456 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0920 456 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 439 - -
Vra8g0920 456 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0920 Vra-Chr8 20465610 20473303 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0920 8 213 MAP Kinase Kinase Kinase AT3G06030 25.463 2.23e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vra8g0920 Pkinase 5.1e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0920 K08960 K08959 gmx:100789031 843.958