Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0918 ATGATGAAAGTGGGATTCGAGCTGGTTCATTCAAATTATAATCCAAACATCATTCGTTCACACATGCATGAAACATGGGATCACTACTCAAATATTACTTCCTTGCCATTTTCTGCTCCAACCCCATCAAACCTATATCCAAAGCCAGCAACAGAAAACCACTGCCTAAACTTAGGACAGAATGAAGTCTCTGATTGGATGGAGGAACACATTGATGACATCACCAAACACCTTGTTCAAGACTTACCAGAAACCACTTCTGACACAACAAGGCTTTCCCATCACAACTTTGTTCCCTCACTTTTACCCAACAACTTGAGTGAAAGAAAAGCTTCAGGCTTTAGACCCCAATTTGAGGCCATCACCAATCTTCACTCAGGTTTAGATCATAGCTACAATGTCTGTGATCAAGGGTTGAGCCTCATAAGCCTTCTAATGGAGTGTGCAGTGGCAATTTCAGTTGACAACCTGGGTGAGGCTCATAGGATGTTACTAGAGCTAACACAAATGGCCTCACCCTACAAAGCATCATGTGGTGAACGCGTTGTTGCTTATTTTACCAAGGCCATGACTTGCAGGGTCATGAATTCTTGGCTTGGGATGTGTTCCCCTTTGGTTGATCACAGAAACATTAACTCAGCATTCCAAGTCTTCAACAACGTTTCCCCTTTCATAAAATTTGCTCACTTCACTTCGAACCAGGCAATCTTTGAGGCAGTAAACCATTGTGACAGTATTCACATAATTGACTTGGACATCATGCAAGGGCTGCAATGGCCAGCTTTTTTCCATATATTAGCCACCAGAATGGAGGGTCCACCACAGGTAACCATGACATGCTTGGGAACCTCAACGGAACTCCTCATTGAAACTGGGAAACAACTCTCCAACTTTGCAAGAAGGCTTGGTATGTCATTCAAGTTCCACCCCATTGCAAGCAAGTTTGGGGAAGTGATTGATGTGTCCATGCTCCATGTAAAGCCTGGGGAGGCAGTGGCAGTGCATTGGTTGCAGCATTCACTGTACGATGCAACTGGACCTGATTGGAAAACACTGAGGCTCCTTGAAGAGTTGGAGCCAAGAATAATCACCTTGGTGGAGCAAGATGTGAACCATGGAGGCTCATTCTTGGATCGTTTTGTGGGCTCCTTGCACTACTACTCAACCCTATTTGATTCTCTTGGAGCATACTTGCACTTTGATGATGAAAACAGGCACCGAGTGGAGCATGGCCTTCTCTCTAGGGAAATCAACAATGTGTTGGCCATAGGAGGCCCTAAGAGGAGTGGTGAAGACAAGTTTAGGCAGTGGAGAAGAGAGCTTGCTAATCATTATTTTCAGCAGATTCCCATGAGTGCCAATTCAATGGCTCAAGCTCAGTTGATATTGAACATGTTTTCACCAGCTTATGGGTATAGCCTTGCACAAGTTGATGGCACATTAAGGCTTGGATGGAAGGATACAAGTTTGTACACAGCTTCTGCATGGACCTATTGTACTTCTAACTAG 1509 0.4427 MMKVGFELVHSNYNPNIIRSHMHETWDHYSNITSLPFSAPTPSNLYPKPATENHCLNLGQNEVSDWMEEHIDDITKHLVQDLPETTSDTTRLSHHNFVPSLLPNNLSERKASGFRPQFEAITNLHSGLDHSYNVCDQGLSLISLLMECAVAISVDNLGEAHRMLLELTQMASPYKASCGERVVAYFTKAMTCRVMNSWLGMCSPLVDHRNINSAFQVFNNVSPFIKFAHFTSNQAIFEAVNHCDSIHIIDLDIMQGLQWPAFFHILATRMEGPPQVTMTCLGTSTELLIETGKQLSNFARRLGMSFKFHPIASKFGEVIDVSMLHVKPGEAVAVHWLQHSLYDATGPDWKTLRLLEELEPRIITLVEQDVNHGGSFLDRFVGSLHYYSTLFDSLGAYLHFDDENRHRVEHGLLSREINNVLAIGGPKRSGEDKFRQWRRELANHYFQQIPMSANSMAQAQLILNMFSPAYGYSLAQVDGTLRLGWKDTSLYTASAWTYCTSN* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0918 502 PANTHER OS05G0485400 PROTEIN 31 498 - -
Vra8g0918 502 ProSiteProfiles GRAS family profile. 132 497 IPR005202 -
Vra8g0918 502 Pfam GRAS domain family 141 497 IPR005202 -
Vra8g0918 502 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 31 498 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0918 Vra-Chr8 20382215 20384198 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0918 136 497 GRAS Transcription Factor Family AT3G54220 55.827 2.04e-136 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra8g0918 GRAS 1.9e-103 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0918 - - gmx:100775656 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0918 8 20382215 20384198 Vra8g0918 8 20382215 20384198 ECH