Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0917 ATGGATTCTGCAAGGAGTTGGCTTCAGAAGTTCCAGCCTCGAGATAGAACCAGGGCTGCTGCGAAGAAGAAGGAGGAGGATAGTATTGGAGGAAACGAGGATTTGAATGCGGCGGTGGATGAAGCAGTGCTTTCCAGTGTCACGAAACAGAAGGTGGCCGCAGCAAAGCAGTACATTGAAAATCATTACAAGGAGCAAATGAAGAACCTTCAGGAGAGGAAAGAGCGTCGAACCATCTTGGAAAAGAAGTTGGCTGATGCAGATGTCTCCGAGGAGGATCAAAACAACCTGCTTAAATTTTTAGAGAAAAAGGAAACTGAATATATGCGCCTTCAGAGGCATAAGATGGGTGTTGATGATTTTGAGTTATTAACAATGATTGGAAAAGGAGCATTTGGAGAGGTCAGAGTCTGTAGGGAGAAGACTAGTGGTCATGTGTATGCAATGAAGAAGCTAAAAAAATCAGAGATGCTCCGCAGAGGCCAGGTTGAGCATGTTAAAGCTGAAAGGAATCTCCTCGCAGAGGTTGACAGCAATTGCATAGTCAAACTTTATTGTTCATTCCAGGATGCTGAATATTTGTATCTTATTATGGAGTATCTACCGGGTGGGGATATGATGACTCTACTAATGAGAAAGGATACCTTGACCGAAGATGAAGCCAGATTTTATGTTGGAGAAACTGTTCTGGCCATTGAATCTATACATAAACACAATTATATACACAGGGATATCAAGCCAGACAATTTGTTACTTGAAAGATACGGCCACTTGAAATTGTCAGATTTTGGACTATGTAAACCATTAGATTGCAATACACTTGAAGAAAAAGATTTTTCTGTGGGTCAGAATGTGAATGGAACTCCACAAAACGAAGATCGGACAACTCCAAAACGTTCACAACAAGAACAACTTCAACATTGGCAAATGAACAGGAGAACACTTGCTTATTCCACAGTTGGTACACCAGATTATATTGCTCCAGAAGTTCTTTTGAAGAAAGGTTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCGATTATGTATGAAATGTTGGTGGGATATCCACCTTTTTATTCTGATGATCCGATGTTGACTTGTAGGAAGATTGTAAATTGGAAAGCTTATTTGAAATTTCCTGAAGAAGCTAGGCTGTCCCCAGAAGCTAAAGATCTTATTAGCAAACTTTTGTGTAATGTAAATCAGAGGCTGGGGTCAAATGGTGCAGATGAAATAAAGGCTCATCCATTCTTCAAAGGTGTTGAATGGGATAAGCTGTATCATATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGACACTCAAAATTTTGAAAAGTTTGATGAGTCTGACAGCCAAGCTCAATCATCGTCAAGATCTGGTCCATGGAGGAAGATGCTTTCATCCAAGGACTTAAATTTTGTTGGATACACATACAAGAACTTTGAAATTGTCAACGATTATCAAGTTCCTGGGATGGCTGAACTGAAGAAGAAACAGTCCAAACCAAAGAGGCCAACCATCAAGTCACTTTTCGAAACACCAGAGCAAGAGTTGTCTGAAACATCTGCTCAAGGAAGCTTTTTAAAGCTCTTGCCACCCCAGTTAGAGGTATCTCGCCGAGACAAGAATCTTCCTCCCAGGTCCTAA 1659 0.4093 MDSARSWLQKFQPRDRTRAAAKKKEEDSIGGNEDLNAAVDEAVLSSVTKQKVAAAKQYIENHYKEQMKNLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTSGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDAEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLERYGHLKLSDFGLCKPLDCNTLEEKDFSVGQNVNGTPQNEDRTTPKRSQQEQLQHWQMNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMLTCRKIVNWKAYLKFPEEARLSPEAKDLISKLLCNVNQRLGSNGADEIKAHPFFKGVEWDKLYHMEAAFIPEVNDELDTQNFEKFDESDSQAQSSSRSGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGMAELKKKQSKPKRPTIKSLFETPEQELSETSAQGSFLKLLPPQLEVSRRDKNLPPRS* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0917 552 CDD STKc_NDR_like 119 483 - -
Vra8g0917 552 ProSiteProfiles Protein kinase domain profile. 121 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0917 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Vra8g0917 552 MobiDBLite consensus disorder prediction 9 31 - -
Vra8g0917 552 Gene3D Transferase(Phosphotransferase) domain 1 207 436 - -
Vra8g0917 552 MobiDBLite consensus disorder prediction 516 532 - -
Vra8g0917 552 Pfam Protein kinase domain 122 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0917 552 MobiDBLite consensus disorder prediction 500 552 - -
Vra8g0917 552 Gene3D Phosphorylase Kinase; domain 1 111 206 - -
Vra8g0917 552 MobiDBLite consensus disorder prediction 281 302 - -
Vra8g0917 552 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Vra8g0917 552 MobiDBLite consensus disorder prediction 1 31 - -
Vra8g0917 552 ProSiteProfiles AGC-kinase C-terminal domain profile. 420 492 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vra8g0917 552 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 24 550 - -
Vra8g0917 552 PANTHER SERINE/THREONINE-PROTEIN KINASE 24 550 - -
Vra8g0917 552 Pfam Protein kinase C terminal domain 438 482 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vra8g0917 552 Coils Coil 63 83 - -
Vra8g0917 552 SUPERFAMILY Protein kinase-like (PK-like) 94 472 IPR011009 -
Vra8g0917 552 SMART pkinase_C_6 420 484 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vra8g0917 552 SMART serkin_6 121 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0917 Vra-Chr8 20368357 20376189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0917 1 545 AGC Kinase Gene Family AT3G23310 75.956 0.0 852
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vra8g0917 Pkinase 3.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0917 K08790 - gmx:100820558 1015.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0917 8 20368357 20376189 Vra8g0917 8 20368357 20376189 ECH